Browse Element(s) Details


Os.10512.1.S1_at

Description gb:AK121437.1
DB_XREF= gi:37991060
TID=Os.10512.1
CNT=34
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10512 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-017-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023140C07, full insert sequence.
FL= gb:AK072821.1 gb:AK121437.1 gb:AK103985.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5374011/11Thioredoxin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53680OsAffx.4171.1.S1_s_at11/114+31776349..31779383Cyclin, N-terminal domain containing protein, expressed
LOC_Os04g53690Os.16307.1.S1_a_at11/114+31780303..31783653expressed protein
LOC_Os04g53690Os.16307.1.S2_a_at11/114+31780303..31783653expressed protein
LOC_Os04g53700Os.21263.1.S1_at11/114+31783657..31788264MYND finger family protein, expressed
LOC_Os04g53710OsAffx.4172.1.S1_at11/114+31789450..31790037Plastocyanin-like domain containing protein
LOC_Os04g53720Os.15825.1.S1_at11/114+31790413..31797344SNF2 domain-containing protein, putative, expressed
LOC_Os04g53720Os.15825.1.S2_at8/114+31790413..31797344SNF2 domain-containing protein, putative, expressed
LOC_Os04g53730OsAffx.4173.1.S1_s_at11/114+31798593..31799339expressed protein
LOC_Os04g53730Os.56185.1.S1_x_at10/114+31798593..31799339expressed protein
LOC_Os04g53730Os.56185.1.S1_at9/114+31798593..31799339expressed protein
LOC_Os04g53740Os.10512.1.S1_at11/114+31800310..31803664Thioredoxin family protein, expressed
LOC_Os04g53750Os.53731.1.S1_at11/114+31804804..31813420retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g53750Os.27639.1.S1_x_at10/114+31804804..31813420retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g53750OsAffx.8980.1.S1_at7/114+31804804..31813420retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g53760Os.8633.1.S1_a_at11/114+31814841..31819965Kinesin-1, putative, expressed
LOC_Os04g53770OsAffx.14399.1.S1_at11/114+31825701..31829512SDA1 family protein, expressed
LOC_Os04g53770OsAffx.14399.1.S1_x_at11/114+31825701..31829512SDA1 family protein, expressed
LOC_Os04g53770Os.13721.1.S1_at9/114+31825701..31829512SDA1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005829cellular_componentcytosol
GO:0005489molecular_functionelectron transporter activity
GO:0016671molecular_functionoxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10512.1.S1_at--902--6271Chr04:31800593..31800617 (25 bp)
GATGTTGCCTTTATCTTCAGAAACT
LOC_Os04g53740
Os.10512.1.S1_at--163--1431Chr04:31800575..31800599 (25 bp)
AGAAACTTCTCTGTGACCGTGGGTG
LOC_Os04g53740
Os.10512.1.S1_at--878--7131Chr04:31800553..31800577 (25 bp)
GTGCTTCTTGGTCAGGTCCGGAAAA
LOC_Os04g53740
Os.10512.1.S1_at--347--9151Chr04:31800527..31800551 (25 bp)
TGCGTCCATGTGTACATTCTAGCTT
LOC_Os04g53740
Os.10512.1.S1_at--402--10011Chr04:31800508..31800532 (25 bp)
TAGCTTTGCTCCTGTGACTCTGAAT
LOC_Os04g53740
Os.10512.1.S1_at--617--7371Chr04:31800495..31800519 (25 bp)
GTGACTCTGAATGGTGTCCCTTTGA
LOC_Os04g53740
Os.10512.1.S1_at--306--7751Chr04:31800483..31800507 (25 bp)
GGTGTCCCTTTGAACTGATAGGCTT
LOC_Os04g53740
Os.10512.1.S1_at--1070--272Chr04:31800466..31800490 (25 bp)
ATAGGCTTGTGCCTTGCGGTAGTTT
LOC_Os04g53740
Os.10512.1.S1_at--1087--4672Chr04:31800451..31800475 (25 bp)
GCGGTAGTTTGTTCTGCAGGCTGCA
LOC_Os04g53740
Os.10512.1.S1_at--77--8672Chr04:31800424..31800448 (25 bp)
TGTGGCTTTACCATGCTCTATGAAA
LOC_Os04g53740
Os.10512.1.S1_at--102--10351Chr04:31800399..31800423 (25 bp)
TTTACTTACATGTGTTTCCAGTTGA
LOC_Os04g53740
Target Sequence 
GATGTTGCCTTTATCTTCAGAAACTTCTCTGTGACCGTGGGTGCTTCTTGGTCAGGTCCGGAAAAATGCGTCCATGTGTA
CATTCTAGCTTTGCTCCTGTGACTCTGAATGGTGTCCCTTTGAACTGATAGGCTTGTGCCTTGCGGTAGTTTGTTCTGCA
GGCTGCAGCTGTGGCTTTACCATGCTCTATGAAATTTACTTACATGTGTTTCCAGTTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10512.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis