Browse Element(s) Details


Os.52654.1.S1_at

Description gb:AK068564.1
DB_XREF= gi:32978581
TID=Os.52654.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52654 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013151C19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013151C19, full insert sequence.
FL= gb:AK068564.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5378011/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53750Os.53731.1.S1_at11/114+31804804..31813420retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g53750Os.27639.1.S1_x_at10/114+31804804..31813420retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g53750OsAffx.8980.1.S1_at7/114+31804804..31813420retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g53760Os.8633.1.S1_a_at11/114+31814841..31819965Kinesin-1, putative, expressed
LOC_Os04g53770OsAffx.14399.1.S1_at11/114+31825701..31829512SDA1 family protein, expressed
LOC_Os04g53770OsAffx.14399.1.S1_x_at11/114+31825701..31829512SDA1 family protein, expressed
LOC_Os04g53770Os.13721.1.S1_at9/114+31825701..31829512SDA1 family protein, expressed
LOC_Os04g53780Os.52654.1.S1_at11/114+31829999..31832630NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53790Os.27639.1.S1_x_at8/114+31833272..31838717transposon protein, putative, unclassified
LOC_Os04g53790OsAffx.8980.1.S1_at6/114+31833272..31838717transposon protein, putative, unclassified
LOC_Os04g53790Os.53731.1.S1_at1/114+31833272..31838717transposon protein, putative, unclassified
LOC_Os04g53800Os.23101.1.A1_at11/114+31840453..31843326NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53810Os.48545.1.S1_at11/114+31844692..31846667NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53820Os.35344.3.S1_x_at10/114+31849378..31856913transposon protein, putative, Mutator sub-class
LOC_Os04g53820Os.35344.18.S1_x_at8/114+31849378..31856913transposon protein, putative, Mutator sub-class
LOC_Os04g53820OsAffx.22940.5.S1_at7/114+31849378..31856913transposon protein, putative, Mutator sub-class
LOC_Os04g53820OsAffx.22940.5.S1_x_at5/114+31849378..31856913transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009718biological_processanthocyanin biosynthesis
GO:0009809biological_processlignin biosynthesis
GO:0009964biological_processnegative regulation of flavonoid biosynthesis
GO:0042406cellular_componentextrinsic to endoplasmic reticulum membrane
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0009985molecular_functiondihydroflavonol(thiole) lyase activity
GO:0016491molecular_functionoxidoreductase activity
GO:0045551molecular_functioncinnamyl-alcohol dehydrogenase activity
GO:0045552molecular_functiondihydrokaempferol 4-reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52654.1.S1_at--495--1411Chr04:31831533..31831842 (25 bp)
AGACATCTCCCGGAAAGGCGTACTC
LOC_Os04g53780
Os.52654.1.S1_at--693--9911Chr04:31831838..31831862 (25 bp)
TACTCGCTTTCGAAGGTTCTTTCAG
LOC_Os04g53780
Os.52654.1.S1_at--1146--1431Chr04:31831890..31831914 (25 bp)
AGAACGGCATCAGCCTGGTGACCGT
LOC_Os04g53780
Os.52654.1.S1_at--1138--871Chr04:31831953..31832111 (25 bp)
AGGCCAAACCGCGACCAGGAGATGA
LOC_Os04g53780
Os.52654.1.S1_at--109--8851Chr04:31832109..31832133 (25 bp)
TGATCAGCACCGTGAAGCTCATGGA
LOC_Os04g53780
Os.52654.1.S1_at--241--291Chr04:31832302..31832326 (25 bp)
ATACCCGGAGTACAATGTCGACGTC
LOC_Os04g53780
Os.52654.1.S1_at--656--8851Chr04:31832524..31832548 (25 bp)
TGATGCCTTCTTGGAGTACGGTAGA
LOC_Os04g53780
Os.52654.1.S1_at--518--1411Chr04:31832537..31832561 (25 bp)
GAGTACGGTAGAGCCCTCGGGATTC
LOC_Os04g53780
Os.52654.1.S1_at--515--7671Chr04:31832555..31832579 (25 bp)
GGGATTCTGCCATACTGATAACGAT
LOC_Os04g53780
Os.52654.1.S1_at--36--8831Chr04:31832570..31832594 (25 bp)
TGATAACGATGTTGTTCCCCTCGTA
LOC_Os04g53780
Os.52654.1.S1_at--406--6891Chr04:31832592..31832616 (25 bp)
GTATATCATCTGTTTCTCTGGTGGT
LOC_Os04g53780
Target Sequence 
AGACATCTCCCGGAAAGGCGTACTCGCTTTCGAAGGTTCTTTCAGAGAAGGAAGCGAGCAGGGTCGCGGAGGAGAACGGC
ATCAGCCTGGTGACCGTTTGCCCGGTGGTCACCGTTGGCCCGGCGCCGGCAGCGGAGGCCAAACCGCGACCAGGAGATGA
TCAGCACCGTGAAGCTCATGGAGAAGGCCACCGGCGGGCTAATGCTGGTCCACGTCGACGACCTCTGCCGCGCCGAGATA
TTCCTCGCCGAGAAGCCGCCGCCGGCGGCGGCGGCGGCGGCGGCGGAGAGGTACATCTGCTGCGGCCTCAGCGCCACCAT
GCTGCAGCTCGCCCGCTTCCTGGCGGCCAAATACCCGGAGTACAATGTCGACGTCGCCGCCCTCGGCGACCTCCCGGAGA
AGCCGAGGATCCGCCTCTCGTCGGAGAAGCTCGCCGGAGAAGGGTTCGAGTTCAAGAACAGGACGCTGGACGAGATGTAC
GATGATGCCTTCTTGGAGTACGGTAGAGCCCTCGGGATTCTGCCATACTGATAACGATGTTGTTCCCCTCGTATATCATC
TGTTTCTCTGGTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52654.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis