Browse Element(s) Details


Os.48545.1.S1_at

Description gb:AK072654.1
DB_XREF= gi:32982677
TID=Os.48545.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48545 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023133I21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023133I21, full insert sequence.
FL= gb:AK072654.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5381011/11NAD dependent epimerase/dehydratase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53760Os.8633.1.S1_a_at11/114+31814841..31819965Kinesin-1, putative, expressed
LOC_Os04g53770OsAffx.14399.1.S1_at11/114+31825701..31829512SDA1 family protein, expressed
LOC_Os04g53770OsAffx.14399.1.S1_x_at11/114+31825701..31829512SDA1 family protein, expressed
LOC_Os04g53770Os.13721.1.S1_at9/114+31825701..31829512SDA1 family protein, expressed
LOC_Os04g53780Os.52654.1.S1_at11/114+31829999..31832630NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53790Os.27639.1.S1_x_at8/114+31833272..31838717transposon protein, putative, unclassified
LOC_Os04g53790OsAffx.8980.1.S1_at6/114+31833272..31838717transposon protein, putative, unclassified
LOC_Os04g53790Os.53731.1.S1_at1/114+31833272..31838717transposon protein, putative, unclassified
LOC_Os04g53800Os.23101.1.A1_at11/114+31840453..31843326NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53810Os.48545.1.S1_at11/114+31844692..31846667NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53820Os.35344.3.S1_x_at10/114+31849378..31856913transposon protein, putative, Mutator sub-class
LOC_Os04g53820Os.35344.18.S1_x_at8/114+31849378..31856913transposon protein, putative, Mutator sub-class
LOC_Os04g53820OsAffx.22940.5.S1_at7/114+31849378..31856913transposon protein, putative, Mutator sub-class
LOC_Os04g53820OsAffx.22940.5.S1_x_at5/114+31849378..31856913transposon protein, putative, Mutator sub-class
LOC_Os04g53830Os.17014.1.S1_s_at11/114+31859488..31862821NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53830OsAffx.26592.1.S1_at11/114+31859488..31862821NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53830OsAffx.26592.2.S1_at4/114+31859488..31862821NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53840NANA4+31864328..31864807hypothetical protein
LOC_Os04g53850OsAffx.26592.2.S1_at11/114+31866534..31869210NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53850Os.17014.1.S1_s_at11/114+31866534..31869210NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53850Os.17014.1.S1_at11/114+31866534..31869210NAD dependent epimerase/dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009718biological_processanthocyanin biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0009964biological_processnegative regulation of flavonoid biosynthesis
GO:0042406cellular_componentextrinsic to endoplasmic reticulum membrane
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0009985molecular_functiondihydroflavonol(thiole) lyase activity
GO:0016491molecular_functionoxidoreductase activity
GO:0016614molecular_functionoxidoreductase activity, acting on CH-OH group of donors
GO:0045551molecular_functioncinnamyl-alcohol dehydrogenase activity
GO:0045552molecular_functiondihydrokaempferol 4-reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48545.1.S1_at--832--7031Chr04:31846209..31846229 (21 bp)
GTACAACGTCAGATGCGATTGCATC
LOC_Os04g53810
Os.48545.1.S1_at--175--9151Chr04:31846222..31846321 (25 bp)
TGCGATTGCATCGAAGAGCATCACC
LOC_Os04g53810
Os.48545.1.S1_at--652--2691Chr04:31846354..31846378 (25 bp)
AAGCTCATCGGCGAAGGGTTCGAGT
LOC_Os04g53810
Os.48545.1.S1_at--661--7671Chr04:31846438..31846462 (25 bp)
GGGTTGATCCCCAACTGATGGTGAT
LOC_Os04g53810
Os.48545.1.S1_at--90--711Chr04:31846461..31846485 (25 bp)
ATGATGGGCGGCGTAATTCCACTGC
LOC_Os04g53810
Os.48545.1.S1_at--281--91Chr04:31846476..31846500 (25 bp)
ATTCCACTGCTTTGGCGATTACGAC
LOC_Os04g53810
Os.48545.1.S1_at--475--8471Chr04:31846488..31846512 (25 bp)
TGGCGATTACGACCAAACGTGTGTT
LOC_Os04g53810
Os.48545.1.S1_at--875--5851Chr04:31846498..31846522 (25 bp)
GACCAAACGTGTGTTGCTTTCAAAA
LOC_Os04g53810
Os.48545.1.S1_at--1039--2031Chr04:31846525..31846549 (25 bp)
ACTATTGTGTCTAGCATTCTATTGC
LOC_Os04g53810
Os.48545.1.S1_at--1069--6671Chr04:31846576..31846600 (25 bp)
GTTCCAATACATTTGGCGGTTTGGC
LOC_Os04g53810
Os.48545.1.S1_at--920--4011Chr04:31846608..31846632 (25 bp)
CGTTCTGTTCATGTAAGAGGAGGAT
LOC_Os04g53810
Target Sequence 
GTACAACGTCAGATGCGATTGCATCGAAGAGCATCACCCCNAGAAGCCGACCATCTCGCTCTCGTCGGNGAAGCTCATCG
GCGAAGGGTTCGAGTTCAAGTACAAGAACCTGGACGAGATGTACGACGACCTCGTCGCGTACGGCAAGGCCCTGGGGTTG
ATCCCCAACTGATGGTGATGATGGGCGGCGTAATTCCACTGCTTTGGCGATTACGACCAAACGTGTGTTGCTTTCAAAAA
TACTATTGTGTCTAGCATTCTATTGCTANATTGCTAGTAGTACTAGTACCAAGTTCCAATACATTTGGCGGTTTGGCTGT
ACTNCGTTCTGTTCATGTAAGAGGAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48545.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis