Browse Element(s) Details


OsAffx.26592.1.S1_at

Description tigr:9632.m05228
TID=OsAffx.26592.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=anthocyanidin reductase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5383011/11NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os01g729902/11leucine-rich repeat transmembrane protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53790Os.27639.1.S1_x_at8/114+31833272..31838717transposon protein, putative, unclassified
LOC_Os04g53790OsAffx.8980.1.S1_at6/114+31833272..31838717transposon protein, putative, unclassified
LOC_Os04g53790Os.53731.1.S1_at1/114+31833272..31838717transposon protein, putative, unclassified
LOC_Os04g53800Os.23101.1.A1_at11/114+31840453..31843326NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53810Os.48545.1.S1_at11/114+31844692..31846667NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53820Os.35344.3.S1_x_at10/114+31849378..31856913transposon protein, putative, Mutator sub-class
LOC_Os04g53820Os.35344.18.S1_x_at8/114+31849378..31856913transposon protein, putative, Mutator sub-class
LOC_Os04g53820OsAffx.22940.5.S1_at7/114+31849378..31856913transposon protein, putative, Mutator sub-class
LOC_Os04g53820OsAffx.22940.5.S1_x_at5/114+31849378..31856913transposon protein, putative, Mutator sub-class
LOC_Os04g53830Os.17014.1.S1_s_at11/114+31859488..31862821NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53830OsAffx.26592.1.S1_at11/114+31859488..31862821NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53830OsAffx.26592.2.S1_at4/114+31859488..31862821NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53840NANA4+31864328..31864807hypothetical protein
LOC_Os04g53850OsAffx.26592.2.S1_at11/114+31866534..31869210NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53850Os.17014.1.S1_s_at11/114+31866534..31869210NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53850Os.17014.1.S1_at11/114+31866534..31869210NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53860Os.35386.1.S1_at11/114+31871795..31874009Leucoanthocyanidin reductase, putative, expressed
LOC_Os04g53860OsAffx.23094.1.S1_s_at2/114+31871795..31874009Leucoanthocyanidin reductase, putative, expressed
LOC_Os04g53870OsAffx.22492.1.S1_x_at1/114+31876178..31882333retrotransposon protein, putative, unclassified
LOC_Os04g53870OsAffx.22492.1.S1_at1/114+31876178..31882333retrotransposon protein, putative, unclassified
LOC_Os04g53880Os.31312.5.S1_x_at1/114+31882974..31886999retrotransposon protein, putative, unclassified
LOC_Os04g53880Os.31312.2.S1_x_at1/114+31882974..31886999retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009718biological_processanthocyanin biosynthesis
GO:0009964biological_processnegative regulation of flavonoid biosynthesis
GO:0042406cellular_componentextrinsic to endoplasmic reticulum membrane
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0009985molecular_functiondihydroflavonol(thiole) lyase activity
GO:0016301molecular_functionkinase activity
GO:0016491molecular_functionoxidoreductase activity
GO:0045551molecular_functioncinnamyl-alcohol dehydrogenase activity
GO:0045552molecular_functiondihydrokaempferol 4-reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26592.1.S1_at--404--331Chr04:31862445..31862469 (25 bp)
ATACTTGATGACCTTGTGGAGTAAG
LOC_Os04g53830
OsAffx.26592.1.S1_at--328--6271Chr04:31862564..31862588 (25 bp)
GATGTGACATATCCTTTCGTCCAAA
LOC_Os04g53830
OsAffx.26592.1.S1_at--456--7371Chr04:31862567..31862591 (25 bp)
GTGACATATCCTTTCGTCCAAAAAA
LOC_Os04g53830
OsAffx.26592.1.S1_at--864--2572Chr04:31862627..31862651 (25 bp)
AACGAATCTGGACAGGTGTATATCC
LOC_Os04g53830
OsAffx.26592.1.S1_at--92--7751Chr04:31862641..31862665 (25 bp)
GGTGTATATCCAGATTTGTAATACT
LOC_Os04g53830
OsAffx.26592.1.S1_at--914--6498Chr07:23056044..23056064 (21 bp)
GATATGTCACATTCAGTACTAGGAT
NONE
OsAffx.26592.1.S1_at--929--7092Chr04:31862673..31862697 (25 bp)
GTCACATTCAGTACTAGGATGGTTT
LOC_Os04g53830
OsAffx.26592.1.S1_at--498--7691Chr04:31862722..31862746 (25 bp)
GGGTAGATGTCACGAGGACCAAACT
LOC_Os04g53830
OsAffx.26592.1.S1_at--321--8091Chr04:31862737..31862761 (25 bp)
GGACCAAACTATATATGCGCTTGTG
LOC_Os04g53830
OsAffx.26592.1.S1_at--764--9151Chr04:31862752..31862776 (25 bp)
TGCGCTTGTGAAATAAGTGGTCTGT
LOC_Os04g53830
OsAffx.26592.1.S1_at--18--1111Chr04:31862767..31862791 (25 bp)
AGTGGTCTGTGCCTTTAAACATCTC
LOC_Os04g53830
Target Sequence 
ATACTTGATGACCTTGTGGAGTAAGGCAGGGCCCTGGGAATTCTACCACATTGAACGAACAGCTCATGCTGCTCTACTTT
CAACCTACTCCCTTCGTCAAAAAAACGAAACTAAGACTGGATGTGACATATCCTTTCGTCCAAAAAAACGAAACTAAGAC
TGGATGTGACATATTCTAGTACAACGAATCTGGACAGGTGTATATCCAGATTTGTAATACTAAGATATGTCACATTCAGT
ACTAGGATGGTTTAGGATGGTTTTTATGGGATAGAGGGGGTAGATGTCACGAGGACCAAACTATATATGCGCTTGTGAAA
TAAGTGGTCTGTGCCTTTAAACATCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26592.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis