Browse Element(s) Details


Os.17014.1.S1_at

Description gb:AK067411.1
DB_XREF= gi:32977429
TID=Os.17014.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.17014 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013104E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013104E10, full insert sequence.
FL= gb:AK067411.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5385011/11NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g120601/11mTERF family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53800Os.23101.1.A1_at11/114+31840453..31843326NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53810Os.48545.1.S1_at11/114+31844692..31846667NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53820Os.35344.3.S1_x_at10/114+31849378..31856913transposon protein, putative, Mutator sub-class
LOC_Os04g53820Os.35344.18.S1_x_at8/114+31849378..31856913transposon protein, putative, Mutator sub-class
LOC_Os04g53820OsAffx.22940.5.S1_at7/114+31849378..31856913transposon protein, putative, Mutator sub-class
LOC_Os04g53820OsAffx.22940.5.S1_x_at5/114+31849378..31856913transposon protein, putative, Mutator sub-class
LOC_Os04g53830Os.17014.1.S1_s_at11/114+31859488..31862821NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53830OsAffx.26592.1.S1_at11/114+31859488..31862821NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53830OsAffx.26592.2.S1_at4/114+31859488..31862821NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53840NANA4+31864328..31864807hypothetical protein
LOC_Os04g53850OsAffx.26592.2.S1_at11/114+31866534..31869210NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53850Os.17014.1.S1_s_at11/114+31866534..31869210NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53850Os.17014.1.S1_at11/114+31866534..31869210NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os04g53860Os.35386.1.S1_at11/114+31871795..31874009Leucoanthocyanidin reductase, putative, expressed
LOC_Os04g53860OsAffx.23094.1.S1_s_at2/114+31871795..31874009Leucoanthocyanidin reductase, putative, expressed
LOC_Os04g53870OsAffx.22492.1.S1_x_at1/114+31876178..31882333retrotransposon protein, putative, unclassified
LOC_Os04g53870OsAffx.22492.1.S1_at1/114+31876178..31882333retrotransposon protein, putative, unclassified
LOC_Os04g53880Os.31312.5.S1_x_at1/114+31882974..31886999retrotransposon protein, putative, unclassified
LOC_Os04g53880Os.31312.2.S1_x_at1/114+31882974..31886999retrotransposon protein, putative, unclassified
LOC_Os04g53890OsAffx.447.1.S1_at3/114+31894000..31898550retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g53890Os.52609.1.S1_at1/114+31894000..31898550retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g53890OsAffx.22947.2.S1_x_at1/114+31894000..31898550retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009718biological_processanthocyanin biosynthesis
GO:0009809biological_processlignin biosynthesis
GO:0009964biological_processnegative regulation of flavonoid biosynthesis
GO:0042406cellular_componentextrinsic to endoplasmic reticulum membrane
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0009985molecular_functiondihydroflavonol(thiole) lyase activity
GO:0016491molecular_functionoxidoreductase activity
GO:0045551molecular_functioncinnamyl-alcohol dehydrogenase activity
GO:0045552molecular_functiondihydrokaempferol 4-reductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17014.1.S1_at--556--9051Chr04:31868590..31868614 (25 bp)
TGCAGTGGGTCACCGGCTCCGTGTC
LOC_Os04g53850
Os.17014.1.S1_at--509--2591Chr04:31869038..31869062 (25 bp)
AACGAATAGCTGATGCTGCTCTACC
LOC_Os04g53850
Os.17014.1.S1_at--271--4111Chr04:31869040..31869064 (25 bp)
CGAATAGCTGATGCTGCTCTACCTT
LOC_Os04g53850
Os.17014.1.S1_at--670--5232Chr04:31869041..31869065 (25 bp)
GAATAGCTGATGCTGCTCTACCTTC
LOC_Os04g53850
Os.17014.1.S1_at--865--3091Chr04:31869042..31869066 (25 bp)
AATAGCTGATGCTGCTCTACCTTCA
LOC_Os04g53850
Os.17014.1.S1_at--191--311Chr04:31869043..31869067 (25 bp)
ATAGCTGATGCTGCTCTACCTTCAA
LOC_Os04g53850
Os.17014.1.S1_at--697--9111Chr04:31869051..31869075 (25 bp)
TGCTGCTCTACCTTCAACCTAGCTG
LOC_Os04g53850
Os.17014.1.S1_at--956--10491Chr04:31869154..31869178 (25 bp)
TTAAGATGAGCCTAATACACAGTGG
LOC_Os04g53850
Os.17014.1.S1_at--342--6311Chr04:31869158..31869182 (25 bp)
GATGAGCCTAATACACAGTGGATAA
LOC_Os04g53850
Os.17014.1.S1_at--442--3091Chr04:31869167..31869191 (25 bp)
AATACACAGTGGATAATGGCAATGA
LOC_Os04g53850
Os.17014.1.S1_at--676--3291Chr04:31869171..31869195 (25 bp)
CACAGTGGATAATGGCAATGAAGTT
LOC_Os04g53850
Target Sequence 
TGCAGTGGGTCACCGGCTCCGTGTCGATCGTTCACGTCGACGACCTCTGCCGCGCCGAGATATTCCTCGCCGAGAAGGAG
TCATCGTCATTGTCGTCGGCAGAGTCGTCGGCGAGGTACATCTGCTGCAGCTTCAACACCACCGTCTTGGCGCTTGCCCG
TTTCATGGCCGGAAGGTACCCGCAGTACAACGTCAAAACCGACCGCTTCGACGGGATGCCTGAGAAACCGAGAGTCTGCT
GTTCGTCGGAGAAGCTGATCAGGGAAGGGTTCGAGTTCAAGTACACGAATATGGGCGACATACTCGATGACCTTGTAGAG
TACGGCAGGGCCCTGGGAATTCTACCACATTGAACGAATAGCTGATGCTGCTCTACCTTCAACCTAGCTGTCACGAGGAC
CGAACTGGAGTATGCGCTTGCGAAATAAGTGATCAGTGTTTTTAAAGAAAAAANAAATAGTACAGTGTTTTAAGATGAGC
CTAATACACAGTGGATAATGGCAATGAAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17014.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis