Browse Element(s) Details


OsAffx.447.1.S1_at

Description gb:NM_194484.1
DB_XREF= gi:37530327
TID=OsAffx.447.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative polyprotein (OSJNBa0046L02.13), mRNA.
PROD=putative polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0120011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g2164010/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g020608/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g447307/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g520707/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g168507/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g434607/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g147906/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g274906/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g154505/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g378405/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g193305/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g321205/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g484405/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g021105/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g145805/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g316404/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g585704/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g309704/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g372304/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g342603/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g538903/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g351403/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g216403/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g222202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g047902/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g122102/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g123702/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g198402/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g336902/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g181001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g248201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g553201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g361301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g180301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g181201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g180901/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01134Os.11341.3.S1_at11/1110+94309..100623Serine carboxypeptidase family protein, expressed
LOC_Os10g01134Os.11341.3.S1_x_at11/1110+94309..100623Serine carboxypeptidase family protein, expressed
LOC_Os10g01134Os.11341.1.S1_a_at11/1110+94309..100623Serine carboxypeptidase family protein, expressed
LOC_Os10g01150OsAffx.449.1.A1_at11/1110+101923..102590hypothetical protein
LOC_Os10g01150OsAffx.449.1.A1_x_at11/1110+101923..102590hypothetical protein
LOC_Os10g01164OsAffx.448.1.S1_x_at6/1110+104817..107217retrotransposon protein, putative, unclassified
LOC_Os10g01164OsAffx.448.1.S1_at3/1110+104817..107217retrotransposon protein, putative, unclassified
LOC_Os10g01164OsAffx.8127.1.S1_at1/1110+104817..107217retrotransposon protein, putative, unclassified
LOC_Os10g01180OsAffx.20631.1.S1_x_at2/1110+112811..113521retrotransposon protein, putative, unclassified
LOC_Os10g01180Os.33601.3.S1_x_at1/1110+112811..113521retrotransposon protein, putative, unclassified
LOC_Os10g01200OsAffx.447.1.S1_at11/1110+116265..117206retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01210NANA10+118261..119952retrotransposon protein, putative, unclassified
LOC_Os10g01230OsAffx.20820.1.S1_at11/1110+137336..138703retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.447.1.S1_at--378--1451Chr10:116854..116878 (25 bp)
AGAAGCTGACCCTACTGCAATGCAA
LOC_Os10g01200
OsAffx.447.1.S1_at--315--49125Chr12:20308303..20308327 (25 bp)
GCTTCTGCCTGGTGGGATAACTACG
LOC_Os12g33690
OsAffx.447.1.S1_at--403--86110Chr11:25736120..25736144 (25 bp)
TGGTGACCCGTCCAGATGCAACGAA
LOC_Os11g43460
OsAffx.447.1.S1_at--863--13516Chr11:25736218..25736242 (25 bp)
AGAGAGAGTTCCGTGCATTGCAACA
LOC_Os11g43460
OsAffx.447.1.S1_at--3--54719Chr11:25736251..25736275 (25 bp)
GAACGGTTACAGAGTACCTGCACGA
LOC_Os11g43460
OsAffx.447.1.S1_at--443--28112Chr09:8797177..8797201 (25 bp)
AAGTTTTTGTTTGGGCTCGACGATG
LOC_Os09g14790
OsAffx.447.1.S1_at--19--83313Chr09:8797190..8797214 (25 bp)
GGCTCGACGATGAATTGACCAACCA
LOC_Os09g14790
OsAffx.447.1.S1_at--1067--26321Chr12:20308576..20308600 (25 bp)
AACCAGCTAATCTCCGGAGTCTATG
LOC_Os12g33690
OsAffx.447.1.S1_at--127--86715Chr11:25736411..25736435 (25 bp)
TGTGGACAAGGCTATCCGCCAGGAA
LOC_Os11g43460
OsAffx.447.1.S1_at--290--2654Chr11:8203606..8203630 (25 bp)
AAGCCGATTTGTATCCTTGAGACCA
NONE
OsAffx.447.1.S1_at--372--28919Chr11:25740098..25740122 (25 bp)
AAGGTGATCAGGTTTTGCAAAGTTC
LOC_Os11g43460
Target Sequence 
AGAAGCTGACCCTACTGCAATGCAACGACCAAGAGAAAGTTGCTTTTGCTACACACCAGTTGCAAGGTCCCGCTTCTGCC
TGGTGGGATAACTACGTGGTGACCCGTCCAGATGCAACGAAGAAGAGAGAGTTCCGTGCATTGCAACAAGGAACCAGAAC
GGTTACAGAGTACCTGCACGAGTTCAACCGCCTCGCGCGCTACGCTCCTGAGGACGTGCGCACCGATGCTGAGAAGCAGG
AGAAGTTTTTGTTTGGGCTCGACGATGAATTGACCAACCAGCTAATCTCCGGAGTCTATGAGGACTTTGAGAAGCTTGTG
GACAAGGCTATCCGCCAGGAAGATCTGACTTATGTGGAGAAGCCGATTTGTATCCTTGAGACCAGTGAGAGAAGGACCAG
AAACAAGGTGATCAGGTTTTGCAAAGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.447.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis