Browse Element(s) Details


Os.11341.3.S1_x_at

Description gb:NM_194480.1
DB_XREF= gi:37530319
TID=Os.11341.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.11341 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative serine carboxypeptidase (OSJNBa0046L02.10), mRNA.
PROD=putative serine carboxypeptidase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0113411/11Serine carboxypeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01090OsAffx.20823.2.S1_x_at11/1110+69449..70417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01090OsAffx.20823.2.S1_at11/1110+69449..70417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01090OsAffx.22945.1.S1_at1/1110+69449..70417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01100Os.20092.1.S1_at11/1110+79108..81917Protein kinase domain containing protein, expressed
LOC_Os10g01110Os.46869.1.A1_at11/1110+84584..87611Serine carboxypeptidase family protein, expressed
LOC_Os10g01110Os.46869.2.S1_x_at10/1110+84584..87611Serine carboxypeptidase family protein, expressed
LOC_Os10g01110OsAffx.19331.1.S1_at1/1110+84584..87611Serine carboxypeptidase family protein, expressed
LOC_Os10g01120OsAffx.450.1.S1_at11/1110+89181..90171retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01134Os.11341.3.S1_at11/1110+94309..100623Serine carboxypeptidase family protein, expressed
LOC_Os10g01134Os.11341.3.S1_x_at11/1110+94309..100623Serine carboxypeptidase family protein, expressed
LOC_Os10g01134Os.11341.1.S1_a_at11/1110+94309..100623Serine carboxypeptidase family protein, expressed
LOC_Os10g01150OsAffx.449.1.A1_at11/1110+101923..102590hypothetical protein
LOC_Os10g01150OsAffx.449.1.A1_x_at11/1110+101923..102590hypothetical protein
LOC_Os10g01164OsAffx.448.1.S1_x_at6/1110+104817..107217retrotransposon protein, putative, unclassified
LOC_Os10g01164OsAffx.448.1.S1_at3/1110+104817..107217retrotransposon protein, putative, unclassified
LOC_Os10g01164OsAffx.8127.1.S1_at1/1110+104817..107217retrotransposon protein, putative, unclassified
LOC_Os10g01180OsAffx.20631.1.S1_x_at2/1110+112811..113521retrotransposon protein, putative, unclassified
LOC_Os10g01180Os.33601.3.S1_x_at1/1110+112811..113521retrotransposon protein, putative, unclassified
LOC_Os10g01200OsAffx.447.1.S1_at11/1110+116265..117206retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01210NANA10+118261..119952retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0019748biological_processsecondary metabolism
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0016752molecular_functionsinapoyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11341.3.S1_x_at--255--3911Chr10:100514..100538 (25 bp)
CTGGTTTCGGCAACATGGGCGGCAT
LOC_Os10g01134
Os.11341.3.S1_x_at--769--1151Chr10:100475..100499 (25 bp)
AGTCGGGCGAGGAACGTGATAACAC
LOC_Os10g01134
Os.11341.3.S1_x_at--491--7891Chr10:100441..100465 (25 bp)
GGTTCCAAGGGAGGCTGCCGTTCCA
LOC_Os10g01134
Os.11341.3.S1_x_at--976--6131Chr10:100397..100421 (25 bp)
GAGGTGGACAACACCAATACCGTTG
LOC_Os10g01134
Os.11341.3.S1_x_at--108--3051Chr10:100382..100406 (25 bp)
AATACCGTTGAGCTCTTCTACTACT
LOC_Os10g01134
Os.11341.3.S1_x_at--137--9911Chr10:100364..100388 (25 bp)
TACTACTTCATCCAGTCGGAGCGCA
LOC_Os10g01134
Os.11341.3.S1_x_at--59--9571Chr10:100270..100294 (25 bp)
TCTTCGAGATTGGTACCCAGCTCTA
LOC_Os10g01134
Os.11341.3.S1_x_at--364--7851Chr10:100259..100283 (25 bp)
GGTACCCAGCTCTATCTTAATTATT
LOC_Os10g01134
Os.11341.3.S1_x_at--685--191Chr10:100237..100261 (25 bp)
ATTTCTTCATTCATTTTCGATCGCC
LOC_Os10g01134
Os.11341.3.S1_x_at--659--9591Chr10:100231..100255 (25 bp)
TCATTCATTTTCGATCGCCCAATAA
LOC_Os10g01134
Os.11341.3.S1_x_at--1151--8391Chr10:100221..100245 (25 bp)
TCGATCGCCCAATAAATTAACCACT
LOC_Os10g01134
Target Sequence 
CTGGTTTCGGCAACATGGGCGGCATCGGCGCCGACGACGAGTCGGGCGAGGAACGTGATAACACACGTGAAGGGGTTCCA
AGGGAGGCTGCCGTTCCACCTGGAGACGGGGTATGTGGAGGTGGACAACACCAATACCGTTGAGCTCTTCTACTACTTCA
TCCAGTCGGAGCGCAGCCCCGCCGATGACCCCCTCATCCTCTGGATCACCGGCGGCCCCGGCTGCTCCGCCCTCTCCGGC
CTCCTCTTCGAGATTGGTACCCAGCTCTATCTTAATTATTTCTTCATTCATTTTCGATCGCCCAATAAATTAACCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11341.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis