Browse Element(s) Details


OsAffx.19331.1.S1_at

Description tigr:9639.m03906
TID=OsAffx.19331.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AC004786 putative serine carboxypeptidase I
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4239011/11Serine carboxypeptidase family protein
LOC_Os10g011101/11Serine carboxypeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42320NANA11+24978783..24984893retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42330NANA11+24985210..24988136retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g42340NANA11+24989842..24990264hypothetical protein
LOC_Os11g42350Os.11583.1.S1_at11/1111+24990848..24995516glutathione synthetase family protein, expressed
LOC_Os11g42350Os.38748.1.S1_s_at11/1111+24990848..24995516glutathione synthetase family protein, expressed
LOC_Os11g42360OsAffx.31248.1.S1_x_at11/1111+24996486..24997173hypothetical protein
LOC_Os11g42360OsAffx.31248.1.S1_at11/1111+24996486..24997173hypothetical protein
LOC_Os11g42360OsAffx.31248.2.S1_x_at2/1111+24996486..24997173hypothetical protein
LOC_Os11g42370Os.51179.1.S1_at11/1111+25000231..25001814Transferase family protein, expressed
LOC_Os11g42380OsAffx.19330.1.S1_at11/1111+25002100..25002673hypothetical protein
LOC_Os11g42390OsAffx.19331.1.S1_at11/1111+25008232..25014363Serine carboxypeptidase family protein
LOC_Os11g42390Os.46869.2.S1_x_at5/1111+25008232..25014363Serine carboxypeptidase family protein
LOC_Os11g42400NANA11+25017803..25018554hypothetical protein
LOC_Os11g42410NANA11+25021292..25024910expressed protein
LOC_Os11g42420Os.8764.1.A1_a_at11/1111+25026877..25035897Nuclear pore protein 84/107 containing protein, expressed
LOC_Os11g42430OsAffx.19332.1.S1_at11/1111+25035988..25039028Sugar transporter family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004185molecular_functionserine carboxypeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19331.1.S1_at--1027--10471Chr11:25012625..25012649 (25 bp)
TTACTGCACGTTGGCAAGCCCTCAT
LOC_Os11g42390
OsAffx.19331.1.S1_at--654--4031Chr11:25012633..25012657 (25 bp)
CGTTGGCAAGCCCTCATAATCCGCG
LOC_Os11g42390
OsAffx.19331.1.S1_at--505--9791Chr11:25012664..25012688 (25 bp)
TAAGCCATTTACTTCAGGAGGACGG
LOC_Os11g42390
OsAffx.19331.1.S1_at--259--5751Chr11:25012684..25012708 (25 bp)
GACGGCAGATGCTCCAACTCCAAGA
LOC_Os11g42390
OsAffx.19331.1.S1_at--499--1331Chr11:25012706..25012730 (25 bp)
AGAGGACCAAGACCTTCACTTGTCT
LOC_Os11g42390
OsAffx.19331.1.S1_at--624--9692Chr11:25012721..25012745 (25 bp)
TCACTTGTCTGAGATTTCTTCAGAA
LOC_Os11g42390
OsAffx.19331.1.S1_at--758--3411Chr11:25012881..25012905 (25 bp)
CAGCAAGATATACCATGTCCAGAAT
LOC_Os11g42390
OsAffx.19331.1.S1_at--371--6331Chr11:25013112..25013136 (25 bp)
GATGCAACTTTGACATTCCGTACAC
LOC_Os11g42390
OsAffx.19331.1.S1_at--414--10751Chr11:25013121..25013145 (25 bp)
TTGACATTCCGTACACTCGCGACAT
LOC_Os11g42390
OsAffx.19331.1.S1_at--424--7031Chr11:25013131..25013155 (25 bp)
GTACACTCGCGACATCAAAAGTTCA
LOC_Os11g42390
OsAffx.19331.1.S1_at--651--591Chr11:25013885..25013905 (21 bp)
ATGCCTTACTATGCTTGCAAGTGGA
LOC_Os11g42390
Target Sequence 
TTACTGCACGTTGGCAAGCCCTCATAATCCGCGCATCGATAAGCCATTTACTTCAGGAGGACGGCAGATGCTCCAACTCC
AAGAGGACCAAGACCTTCACTTGTCTGAGATTTCTTCAGAATGCAGAACAGCAAGATATACCATGTCCAGAATATGGGCA
AACAATGACACAGTAAGAGAGGCACTTGGAATACACCAGGGAACAGTTCCTTCGTGGCAAAGATGCAACTTTGACATTCC
GTACACTCGCGACATCAAAAGTTCAATAAGATACCATCTGGATTTGACAGCTAGAGGCTACAGAAGCCTAATTTACAGTG
GTGATCATGACATGGCTATCCCTTTCATCGGCACGCAAGCCTGGATTAAGTCTCTGAATTTCTCTGTTGTGGATAAGTGG
AGACCATGGTTTGTGGATGGACAAGTTGGAGGATATACAAGGTCATACTCTAATAACCTCACATTCGCAACTGTCAAGGG
TGGTGGACATACAGCTCCAGAGTACATGCCAAAGCAATGCCTTACTATGCTTGCAAGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19331.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis