Browse Element(s) Details


Os.8764.1.A1_a_at

Description gb:CB632735
DB_XREF= gi:29627724
DB_XREF=OSIIEb11C19.r
CLONE=OSIIEb11C19
TID=Os.8764.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.8764 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_188028.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4242011/11Nuclear pore protein 84/107 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42380OsAffx.19330.1.S1_at11/1111+25002100..25002673hypothetical protein
LOC_Os11g42390OsAffx.19331.1.S1_at11/1111+25008232..25014363Serine carboxypeptidase family protein
LOC_Os11g42390Os.46869.2.S1_x_at5/1111+25008232..25014363Serine carboxypeptidase family protein
LOC_Os11g42400NANA11+25017803..25018554hypothetical protein
LOC_Os11g42410NANA11+25021292..25024910expressed protein
LOC_Os11g42420Os.8764.1.A1_a_at11/1111+25026877..25035897Nuclear pore protein 84/107 containing protein, expressed
LOC_Os11g42430OsAffx.19332.1.S1_at11/1111+25035988..25039028Sugar transporter family protein, expressed
LOC_Os11g42440OsAffx.19333.1.S1_at11/1111+25041385..25046180Protein kinase domain containing protein, expressed
LOC_Os11g42450OsAffx.31440.1.S1_at11/1111+25050757..25051950Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8764.1.A1_a_at--470--2951Chr11:25034690..25034714 (25 bp)
AATCGATTTCAACCTGGAGTTTCAA
LOC_Os11g42420
Os.8764.1.A1_a_at--985--1931Chr11:25034725..25034749 (25 bp)
ACGGCTTGATGCTTGGTATTCTGAT
LOC_Os11g42420
Os.8764.1.A1_a_at--187--1991Chr11:25034771..25034795 (25 bp)
ACTGCTGCATACATAATTCGTGGGC
LOC_Os11g42420
Os.8764.1.A1_a_at--153--111Chr11:25034786..25034810 (25 bp)
ATTCGTGGGCTTTGTCGTAGATGCT
LOC_Os11g42420
Os.8764.1.A1_a_at--1060--8711Chr11:25034798..25034822 (25 bp)
TGTCGTAGATGCTGCCTGCCAGAAA
LOC_Os11g42420
Os.8764.1.A1_a_at--422--2531Chr11:25034821..25034843 (23 bp)
AACTATTCTACGATCTATGCAGGCA
LOC_Os11g42420
Os.8764.1.A1_a_at--184--4991Chr11:25034943..25034967 (25 bp)
GCATCCATCGCTCTATCTGAAGCAG
LOC_Os11g42420
Os.8764.1.A1_a_at--832--5391Chr11:25034961..25034985 (25 bp)
GAAGCAGGTGATTCTCTAGATCATT
LOC_Os11g42420
Os.8764.1.A1_a_at--1158--3591Chr11:25034996..25035020 (25 bp)
CATTGAGTTGGTTGCTTCATCGGAA
LOC_Os11g42420
Os.8764.1.A1_a_at--856--8211Chr11:25035024..25035048 (25 bp)
GGAATAATGCATTTGTTCAGCCAAC
LOC_Os11g42420
Os.8764.1.A1_a_at--8--8231Chr11:25035145..25035169 (25 bp)
GGAATTCCTGCTTTTTGAGAGAGAA
LOC_Os11g42420
Target Sequence 
AATCGATTTCAACCTGGAGTTTCAATTGAAATATCACGGCTTGATGCTTGGTATTCTGATGGTCATGGTTCAGTAGAAAG
CACTGCTGCATACATAATTCGTGGGCTTTGTCGTAGATGCTGCCTGCCAGAAACTATTCTACGATCTATGCAGGCATCCA
TCGCTCTATCTGAAGCAGGTGATTCTCTAGATCATTGTGATAAGCTCATTGAGTTGGTTGCTTCATCGGAATCTGGAATA
ATGCATTTGTTCAGCCAACAGCAGTTGCAGGAATTCCTGCTTTTTGAGAGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8764.1.A1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis