Browse Element(s) Details


Os.46869.2.S1_x_at

Description gb:NM_194477.1
DB_XREF= gi:37530313
TID=Os.46869.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46869 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative serine carboxypeptidase (OSJNBa0046L02.7), mRNA.
PROD=putative serine carboxypeptidase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0111010/11Serine carboxypeptidase family protein, expressed
LOC_Os11g423905/11Serine carboxypeptidase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01070OsAffx.20824.1.S1_at10/1110+59581..60476hypothetical protein
LOC_Os10g01080Os.11788.1.S1_at8/1110+65261..66414pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os10g01080Os.36435.2.S1_x_at5/1110+65261..66414pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os10g01090OsAffx.20823.2.S1_x_at11/1110+69449..70417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01090OsAffx.20823.2.S1_at11/1110+69449..70417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01090OsAffx.22945.1.S1_at1/1110+69449..70417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01100Os.20092.1.S1_at11/1110+79108..81917Protein kinase domain containing protein, expressed
LOC_Os10g01110Os.46869.1.A1_at11/1110+84584..87611Serine carboxypeptidase family protein, expressed
LOC_Os10g01110Os.46869.2.S1_x_at10/1110+84584..87611Serine carboxypeptidase family protein, expressed
LOC_Os10g01110OsAffx.19331.1.S1_at1/1110+84584..87611Serine carboxypeptidase family protein, expressed
LOC_Os10g01120OsAffx.450.1.S1_at11/1110+89181..90171retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01134Os.11341.3.S1_at11/1110+94309..100623Serine carboxypeptidase family protein, expressed
LOC_Os10g01134Os.11341.3.S1_x_at11/1110+94309..100623Serine carboxypeptidase family protein, expressed
LOC_Os10g01134Os.11341.1.S1_a_at11/1110+94309..100623Serine carboxypeptidase family protein, expressed
LOC_Os10g01150OsAffx.449.1.A1_at11/1110+101923..102590hypothetical protein
LOC_Os10g01150OsAffx.449.1.A1_x_at11/1110+101923..102590hypothetical protein
LOC_Os10g01164OsAffx.448.1.S1_x_at6/1110+104817..107217retrotransposon protein, putative, unclassified
LOC_Os10g01164OsAffx.448.1.S1_at3/1110+104817..107217retrotransposon protein, putative, unclassified
LOC_Os10g01164OsAffx.8127.1.S1_at1/1110+104817..107217retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004185molecular_functionserine carboxypeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46869.2.S1_x_at--837--4052Chr11:25012141..25012160 (20 bp)
CGATGCTCCATCCAAAATTCCATTT
LOC_Os11g42390
Os.46869.2.S1_x_at--137--8011Chr10:86652..86676 (25 bp)
GGATGGGTCTCATATCTGACCAACT
LOC_Os10g01110
Os.46869.2.S1_x_at--1083--3251NONE
CAACTGTATCAGTGTGTCAAGGACA
NONE
Os.46869.2.S1_x_at--407--3072Chr11:25012608..25012632 (25 bp)
AATCACATTCTGGAGCCTTACTGCA
LOC_Os11g42390
Os.46869.2.S1_x_at--815--352Chr11:25012648..25012672 (25 bp)
ATAATCCGCGCATCGATAAGCCATT
LOC_Os11g42390
Os.46869.2.S1_x_at--879--4431Chr10:85967..86289 (25 bp)
GCCATTCACTTCAGGGACGGCAGAA
LOC_Os10g01110
Os.46869.2.S1_x_at--994--1072Chr11:25013088..25013112 (25 bp)
AGGGAACAGTTCCTTCGTGGCAAAG
LOC_Os11g42390
Os.46869.2.S1_x_at--762--671Chr10:85629..85653 (25 bp)
ATGACATGATTATCCCTTTCATCGG
LOC_Os10g01110
Os.46869.2.S1_x_at--328--5171Chr10:85601..85625 (25 bp)
GCAAGCCTGGATTAGATCTCTGAAT
LOC_Os10g01110
Os.46869.2.S1_x_at--528--9792Chr11:25013456..25013480 (25 bp)
TAACCTCACATTCGCAACTGTCAAG
LOC_Os11g42390
Os.46869.2.S1_x_at--931--7711Chr10:85066..85090 (25 bp)
GGGTGGTGGACATACTGCTCCAGAA
LOC_Os10g01110
Target Sequence 
CGATGCTCCATCCAAAATTCCATTTGCCCATGGGATGGGTCTCATATCTGACCAACTGTATCAGTGTGTCAAGGACATAT
ACGGAAATCACATTCTGGAGCCTTACTGCACTTTTGCAAGCCCGCATAATCCGCGCATCGATAAGCCATTCACTTCAGGG
ACGGCAGAATATACAATGTCCAGAATATGGGCCAACAATGATACAGTAAGAGAGGCCCTTGGAATTCACCAGGGAACAGT
TCCTTCGTGGCAAAGATGCAACTACGACATTCTGTACACTTATGACATCAAAAGTTCAGTAAGATACCATCTGGATTTGA
CAACTAGAGGCTACAGAAGCCTAATTTACAGTGGTGATCATGACATGATTATCCCTTTCATCGGCACGCAAGCCTGGATT
AGATCTCTGAATTTCTCTGTCGTGGATGAGTGGAGACCATGGTTTGTGGATGGACAAGTTGCAGGATATATAAGGTCATA
CTCCAATAACCTCACATTCGCAACTGTCAAGGGTGGTGGACATACTGCTCCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46869.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis