Browse Element(s) Details


Os.36435.2.S1_x_at

Description gb:NM_193609.1
DB_XREF= gi:34914301
GEN=B1151A10.18
TID=Os.36435.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.36435 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putativeethylene-responsive protein (B1151A10.18), mRNA.
PROD=putativeethylene-responsive protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3928011/11pyridoxin biosynthesis protein ER1, putative
LOC_Os05g187808/11Rpp14 family protein, expressed
LOC_Os11g480806/11pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os10g089606/11pyridoxin biosynthesis protein ER1, putative
LOC_Os10g010805/11pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os10g115205/11pyridoxin biosynthesis protein ER1, putative
LOC_Os07g010205/11pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os02g504601/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g39230NANA1+22394645..22395088hypothetical protein
LOC_Os01g39250Os.12205.1.S1_at11/111+22401234..22406708ATP-dependent metalloprotease FtsH family protein, expressed
LOC_Os01g39260Os.19618.1.S1_at11/111+22409139..22415086ATP-dependent metalloprotease FtsH family protein, expressed
LOC_Os01g39270Os.16736.1.S1_at11/111+22415051..22417932NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os01g39270Os.16736.1.S1_s_at11/111+22415051..22417932NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os01g39270Os.40799.1.S1_at10/111+22415051..22417932NAD binding domain of 6-phosphogluconate dehydrogenase family protein, expressed
LOC_Os01g39280Os.36435.2.S1_x_at11/111+22418395..22418736pyridoxin biosynthesis protein ER1, putative
LOC_Os01g39280OsAffx.20707.1.S1_x_at1/111+22418395..22418736pyridoxin biosynthesis protein ER1, putative
LOC_Os01g39280OsAffx.20707.2.S1_x_at1/111+22418395..22418736pyridoxin biosynthesis protein ER1, putative
LOC_Os01g39290Os.52512.1.S1_at3/111+22425382..22426396Harpin-induced protein 1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0008033biological_processtRNA processing
GO:0008615biological_processpyridoxine biosynthesis
GO:0009723biological_processresponse to ethylene stimulus
GO:0042819biological_processvitamin B6 biosynthesis
GO:0042828biological_processresponse to pathogen
GO:0005829cellular_componentcytosol
GO:0005886cellular_componentplasma membrane
GO:0012505cellular_componentendomembrane system
GO:0004526molecular_functionribonuclease P activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36435.2.S1_x_at--138--1874Chr10:6150870..6150894 (25 bp)
ACGACGACGAGGTCTTCGCCTACGC
LOC_Os10g11520
Os.36435.2.S1_x_at--610--3714Chr10:6150827..6150851 (25 bp)
CTACGACCTCGTCATGCAGACCAAG
LOC_Os10g11520
Os.36435.2.S1_x_at--992--5837Chr11:28429950..28430163 (25 bp)
GACCTCGTCATGCAGACCAAGCAGC
LOC_Os11g48080
Os.36435.2.S1_x_at--1134--9394Chr10:6150819..6150843 (25 bp)
TCGTCATGCAGACCAAGCAGCTGGG
LOC_Os10g11520
Os.36435.2.S1_x_at--1015--4013Chr11:28430177..28430201 (25 bp)
CGTCGTGCAGTTCGCGGCCGGCGGC
LOC_Os11g48080
Os.36435.2.S1_x_at--418--1835Chr11:28430218..28430242 (25 bp)
ACGCCGCCCTCATGATGCAGCTCGG
LOC_Os11g48080
Os.36435.2.S1_x_at--60--1596Chr11:28430236..28430260 (25 bp)
AGCTCGGCTGCGACGGCGTCTTCGT
LOC_Os11g48080
Os.36435.2.S1_x_at--276--4816Chr11:28430263..28430287 (25 bp)
GCTCGGGCATCTTCAAGAGCGGCGA
LOC_Os11g48080
Os.36435.2.S1_x_at--44--8277Chr11:28430268..28430292 (25 bp)
GGCATCTTCAAGAGCGGCGACCCCG
LOC_Os11g48080
Os.36435.2.S1_x_at--68--7111Chr01:22418451..22418475 (25 bp)
GTCACCCACTGCAGGTTGTCGCGTC
LOC_Os01g39280
Os.36435.2.S1_x_at--570--1014Chr04:21639570..21639589 (20 bp)
AGGTTGTCGCGTCCAAGCACGCCGC
NONE
Target Sequence 
ACGACGACGAGGTCTTCGCCTACGCCAAGCGCATCGCCGCGCCCTACGACCTCGTCATGCAGACCAAGCAGCTGGGCCGC
CTCCCCGTCGTGCAGTTCGCGGCCGGCGGCGTCACCACCCCCGCCGACGCCGCCCTCATGATGCAGCTCGGCTGCGACGG
CGTCTTCGTCGGCTCGGGCATCTTCAAGAGCGGCGACCCCGCGCGCCGCGCCCGCGCCATCGTGCAGGCCGTCACCCACT
GCAGGTTGTCGCGTCCAAGCACGCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36435.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis