Browse Element(s) Details


OsAffx.20707.1.S1_x_at

Description gb:NM_195071.1
DB_XREF= gi:37531501
TID=OsAffx.20707.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative protein similar to ethylene-inducible protein Hever (OSJNBa0071I20.8), mRNA.
PROD=putative protein similar to ethylene-inducibleprotein Hever
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g089603/11pyridoxin biosynthesis protein ER1, putative
LOC_Os05g187801/11Rpp14 family protein, expressed
LOC_Os10g115201/11pyridoxin biosynthesis protein ER1, putative
LOC_Os01g392801/11pyridoxin biosynthesis protein ER1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08910Os.28943.1.S1_x_at1/1110+4586535..4589904retrotransposon protein, putative, unclassified
LOC_Os10g08920NANA10+4590530..4596470retrotransposon protein, putative, unclassified
LOC_Os10g08930Os.9334.1.S1_at11/1110+4598127..460112240S ribosomal protein S20, putative, expressed
LOC_Os10g08940Os.7453.1.S1_x_at10/1110+4601979..4608345phosphatidylinositolglycan class O, putative, expressed
LOC_Os10g08940Os.7453.2.S1_x_at10/1110+4601979..4608345phosphatidylinositolglycan class O, putative, expressed
LOC_Os10g08940Os.7453.1.S1_at7/1110+4601979..4608345phosphatidylinositolglycan class O, putative, expressed
LOC_Os10g08950NANA10+4609071..4609820hypothetical protein
LOC_Os10g08960Os.36435.2.S1_x_at6/1110+4614043..4614495pyridoxin biosynthesis protein ER1, putative
LOC_Os10g08960OsAffx.20707.1.S1_x_at3/1110+4614043..4614495pyridoxin biosynthesis protein ER1, putative
LOC_Os10g08960OsAffx.20707.2.S1_x_at1/1110+4614043..4614495pyridoxin biosynthesis protein ER1, putative
LOC_Os10g08960OsAffx.20707.1.S1_at1/1110+4614043..4614495pyridoxin biosynthesis protein ER1, putative
LOC_Os10g08970NANA10+4616361..4619716hAT family dimerisation domain containing protein
LOC_Os10g08980OsAffx.30348.1.S1_at11/1110+4623193..4626048zeaxanthin cleavage oxygenase, putative
LOC_Os10g08990Os.41248.4.S1_x_at1/1110+4626852..4630147retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g09000OsAffx.25805.1.S1_x_at8/1110+4634100..4634439hypothetical protein
LOC_Os10g09000OsAffx.25805.1.S1_at7/1110+4634100..4634439hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0008033biological_processtRNA processing
GO:0008615biological_processpyridoxine biosynthesis
GO:0042819biological_processvitamin B6 biosynthesis
GO:0005829cellular_componentcytosol
GO:0005886cellular_componentplasma membrane
GO:0012505cellular_componentendomembrane system
GO:0004526molecular_functionribonuclease P activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20707.1.S1_x_at--449--631Chr10:4614559..4614588 (25 bp)
ATGCTCCGCGCTGCCCGAGGAAGCC
NONE
OsAffx.20707.1.S1_x_at--440--951Chr10:4614544..4614566 (23 bp)
AGGAAGCCGCGCAGCCGTGTCTGCA
NONE
OsAffx.20707.1.S1_x_at--631--1671Chr10:4614525..4614554 (25 bp)
AGCCGTGTCTGCACTGGCAACGTCG
NONE
OsAffx.20707.1.S1_x_at--537--8713Chr10:4614520..4614549 (25 bp)
TGTCTGCACTGGCAACGTCGTCGAG
NONE
OsAffx.20707.1.S1_x_at--628--3351Chr10:4614486..4614510 (25 bp)
CACGAGTGCTCCATCATGGGTGAAA
NONE
OsAffx.20707.1.S1_x_at--553--4791Chr10:4614479..4614503 (25 bp)
GCTCCATCATGGGTGAAATCCGCGC
NONE
OsAffx.20707.1.S1_x_at--1122--3551Chr10:4614475..4614499 (25 bp)
CATCATGGGTGAAATCCGCGCGCTC
NONE
OsAffx.20707.1.S1_x_at--502--9631Chr10:4614473..4614497 (25 bp)
TCATGGGTGAAATCCGCGCGCTCCA
NONE
OsAffx.20707.1.S1_x_at--138--9953Chr10:6150826..6150850 (25 bp)
TACGACCTCGTCATGCAGACCAAGC
LOC_Os10g11520
OsAffx.20707.1.S1_x_at--185--9051Chr10:4614350..4614374 (25 bp)
TGCAGTTCGCGACCGGCAACGTCGC
LOC_Os10g08960
OsAffx.20707.1.S1_x_at--276--9495Chr03:4613363..4613387 (25 bp)
TCTGCCCGGTGTGCCGCGACAGAGA
NONE
Target Sequence 
ATGCTCCGCGCTGCCCGAGGAAGCCGCGCAGCCGTGTCTGCACTGGCAACGTCGTCGAGGCCGTCCGCCACGAGTGCTCC
ATCATGGGTGAAATCCGCGCGCTCCACAACATGGACGACGACGAGGTCTTCGCCTACGCCAACCGCATCGCCGCGCCCTA
CGACCTCGTCATGCAGACCAAGCAGCTGGGCCGCCTCCCCGTCGTGCAGTTCGCGACCGGCAACGTCGCCACCCCCGCCG
ACGCCGCCCTCATGATGCAGCCCGGCTGCGACGGCGTCTTCGTCAGCTCGGGCATCTTCAAGAGCGGCGACCCCGCACGC
CGCGCCCACGCCATCGTGCAGGCCGTCACCCACTGCAGGTCATCGCGTCCAAGCACGCCGCCGCCTCGTCGTCCTCGCTG
GCACACCTTCGCCGTGGAGCTCTGCCCGGTGTGCCGCGACAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20707.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis