Browse Element(s) Details


Os.7453.1.S1_x_at

Description gb:AK068119.1
DB_XREF= gi:32978137
TID=Os.7453.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7453 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative protein similar to phosphatidylinositol glycan (OSJNBa0071I20.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013134H07, full insert sequence.
FL= gb:AK068119.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0894010/11phosphatidylinositolglycan class O, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08879OsAffx.6610.1.A1_at11/1110+4566559..4582135Nucleotide-sensitive chloride conductance regulator family protein, expressed
LOC_Os10g08879Os.46716.1.S1_at11/1110+4566559..4582135Nucleotide-sensitive chloride conductance regulator family protein, expressed
LOC_Os10g08879Os.46716.2.S1_at10/1110+4566559..4582135Nucleotide-sensitive chloride conductance regulator family protein, expressed
LOC_Os10g08910Os.28943.1.S1_x_at1/1110+4586535..4589904retrotransposon protein, putative, unclassified
LOC_Os10g08920NANA10+4590530..4596470retrotransposon protein, putative, unclassified
LOC_Os10g08930Os.9334.1.S1_at11/1110+4598127..460112240S ribosomal protein S20, putative, expressed
LOC_Os10g08940Os.7453.1.S1_x_at10/1110+4601979..4608345phosphatidylinositolglycan class O, putative, expressed
LOC_Os10g08940Os.7453.2.S1_x_at10/1110+4601979..4608345phosphatidylinositolglycan class O, putative, expressed
LOC_Os10g08940Os.7453.1.S1_at7/1110+4601979..4608345phosphatidylinositolglycan class O, putative, expressed
LOC_Os10g08950NANA10+4609071..4609820hypothetical protein
LOC_Os10g08960Os.36435.2.S1_x_at6/1110+4614043..4614495pyridoxin biosynthesis protein ER1, putative
LOC_Os10g08960OsAffx.20707.1.S1_x_at3/1110+4614043..4614495pyridoxin biosynthesis protein ER1, putative
LOC_Os10g08960OsAffx.20707.2.S1_x_at1/1110+4614043..4614495pyridoxin biosynthesis protein ER1, putative
LOC_Os10g08960OsAffx.20707.1.S1_at1/1110+4614043..4614495pyridoxin biosynthesis protein ER1, putative
LOC_Os10g08970NANA10+4616361..4619716hAT family dimerisation domain containing protein
LOC_Os10g08980OsAffx.30348.1.S1_at11/1110+4623193..4626048zeaxanthin cleavage oxygenase, putative
LOC_Os10g08990Os.41248.4.S1_x_at1/1110+4626852..4630147retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006506biological_processGPI anchor biosynthesis
GO:0008654biological_processphospholipid biosynthesis
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7453.1.S1_x_at--115--6231Chr10:4606984..4607008 (25 bp)
GATGGCCTCCGTTATGGTGCTGCAT
LOC_Os10g08940
Os.7453.1.S1_x_at--328--211Chr10:4607118..4607142 (25 bp)
ATATTATCCGACAAGGCCTTCTTCT
LOC_Os10g08940
Os.7453.1.S1_x_at--76--4451Chr10:4607133..4607157 (25 bp)
GCCTTCTTCTTTCCATTGATACTTT
LOC_Os10g08940
Os.7453.1.S1_x_at--711--9691Chr10:4607167..4607191 (25 bp)
TCACATACTGCCTGTTCTTAGTCTT
LOC_Os10g08940
Os.7453.1.S1_x_at--65--3671Chr10:4607183..4607207 (25 bp)
CTTAGTCTTCCGTTTATTGCCATAT
LOC_Os10g08940
Os.7453.1.S1_x_at--1018--5271Chr10:4607242..4607266 (25 bp)
GAATGATGCCACTGTCACCAGATTA
LOC_Os10g08940
Os.7453.1.S1_x_at--263--5831Chr10:4608092..4608116 (25 bp)
GACCGACTTGTTAGTTGTTCTGGCA
LOC_Os10g08940
Os.7453.1.S1_x_at--1112--8271Chr10:4608113..4608137 (25 bp)
GGCATCTATCTATTACAGCTGACCT
LOC_Os10g08940
Os.7453.1.S1_x_at--877--10371Chr10:4608223..4608247 (25 bp)
TTTTGTCACTACAGTCAGTGGTGTA
LOC_Os10g08940
Os.7453.1.S1_x_at--607--3111Chr10:4608294..4608318 (25 bp)
AATTTGTCATTAACCCAAGGGCCAG
LOC_Os10g08940
Os.7453.1.S1_x_at--1052--2851NONE
AAGGGCCAGATTCTCGGTCACTTTT
NONE
Target Sequence 
GATGGCCTCCGTTATGGTGCTGCATTCATTGGGTTTGATCATTTCCATATTATCCGACAAGGCCTTCTTCTTTCCATTGA
TACTTTTGGNGTTTCTCACATACTGCCTGTTCTTAGTCTTCCGTTTATTGCCATATGCTGGTACAATTCTGCATCCAAGA
ACAGCAAGGTGAATGATGCCACTGTCACCAGATTAATACAGGTGCTTTTGATGTATGGTTTAATTACATCAATCACAACA
ACGCTTACAATCATTTGTGTTACCATTCAANGGCGTCACTTGATGGTCTGGGGTTTATTTGCCCCAAAATACGTATTTGA
TGCTATCGGGCTTNTTCTGACCGACTTGTTAGTTGTTCTGGCATCTATCTATTACAGCTGACCTTGCTATTTTGTTTCNN
NAGATAGACAGGTAGTTTTAAAATTAACGCATTTACGATTTGATTGCANCTATAGAGCTGAAATATNTTTTTTGTCACTA
CAGTCAGTGGTGTAAAATCATGTGTATATTCNATTAAATTCATGTATTATCGTTGAATCAAATTTGTCATTAACCCAAGG
GCCAGATTCTCGGTCACTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7453.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis