Browse Element(s) Details


OsAffx.6610.1.A1_at

Description tigr:9638.m00757
TID=OsAffx.6610.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0887911/11Nucleotide-sensitive chloride conductance regulator family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08830OsAffx.18177.1.S1_s_at11/1110+4541783..4547061hypothetical protein
LOC_Os10g08830Os.41415.1.S1_at2/1110+4541783..4547061hypothetical protein
LOC_Os10g08830Os.27180.1.S1_at1/1110+4541783..4547061hypothetical protein
LOC_Os10g08840Os.10449.1.S1_a_at11/1110+4549322..4554791esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os10g08850OsAffx.6609.1.S1_x_at11/1110+4556819..4558621Nodulin-like family protein, expressed
LOC_Os10g08850OsAffx.6609.1.S1_at11/1110+4556819..4558621Nodulin-like family protein, expressed
LOC_Os10g08879OsAffx.6610.1.A1_at11/1110+4566559..4582135Nucleotide-sensitive chloride conductance regulator family protein, expressed
LOC_Os10g08879Os.46716.1.S1_at11/1110+4566559..4582135Nucleotide-sensitive chloride conductance regulator family protein, expressed
LOC_Os10g08879Os.46716.2.S1_at10/1110+4566559..4582135Nucleotide-sensitive chloride conductance regulator family protein, expressed
LOC_Os10g08910Os.28943.1.S1_x_at1/1110+4586535..4589904retrotransposon protein, putative, unclassified
LOC_Os10g08920NANA10+4590530..4596470retrotransposon protein, putative, unclassified
LOC_Os10g08930Os.9334.1.S1_at11/1110+4598127..460112240S ribosomal protein S20, putative, expressed
LOC_Os10g08940Os.7453.1.S1_x_at10/1110+4601979..4608345phosphatidylinositolglycan class O, putative, expressed
LOC_Os10g08940Os.7453.2.S1_x_at10/1110+4601979..4608345phosphatidylinositolglycan class O, putative, expressed
LOC_Os10g08940Os.7453.1.S1_at7/1110+4601979..4608345phosphatidylinositolglycan class O, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006884biological_processregulation of cell volume
GO:0005216molecular_functionion channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6610.1.A1_at--632--10531Chr10:4566753..4566777 (25 bp)
TTCATCACCACCAGGTAGTAACCGC
LOC_Os10g08879
OsAffx.6610.1.A1_at--481--9591Chr10:4566754..4566778 (25 bp)
TCATCACCACCAGGTAGTAACCGCG
LOC_Os10g08879
OsAffx.6610.1.A1_at--1050--371Chr10:4566756..4566780 (25 bp)
ATCACCACCAGGTAGTAACCGCGCT
LOC_Os10g08879
OsAffx.6610.1.A1_at--198--9651Chr10:4566757..4566781 (25 bp)
TCACCACCAGGTAGTAACCGCGCTT
LOC_Os10g08879
OsAffx.6610.1.A1_at--1016--1711Chr10:4566759..4566783 (25 bp)
ACCACCAGGTAGTAACCGCGCTTCT
LOC_Os10g08879
OsAffx.6610.1.A1_at--207--3371Chr10:4566761..4566785 (25 bp)
CACCAGGTAGTAACCGCGCTTCTCT
LOC_Os10g08879
OsAffx.6610.1.A1_at--110--1711Chr10:4566762..4566786 (25 bp)
ACCAGGTAGTAACCGCGCTTCTCTT
LOC_Os10g08879
OsAffx.6610.1.A1_at--1071--4331Chr10:4566763..4566787 (25 bp)
CCAGGTAGTAACCGCGCTTCTCTTC
LOC_Os10g08879
OsAffx.6610.1.A1_at--803--3451Chr10:4566764..4566788 (25 bp)
CAGGTAGTAACCGCGCTTCTCTTCG
LOC_Os10g08879
OsAffx.6610.1.A1_at--452--1011Chr10:4566765..4566789 (25 bp)
AGGTAGTAACCGCGCTTCTCTTCGT
LOC_Os10g08879
OsAffx.6610.1.A1_at--1153--6911Chr10:4566767..4566791 (25 bp)
GTAGTAACCGCGCTTCTCTTCGTTC
LOC_Os10g08879
Target Sequence 
TTCATCACCACCAGGTAGTAACCGCGCTTCTCTTCGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6610.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis