Browse Element(s) Details


Os.9334.1.S1_at

Description gb:AK121628.1
DB_XREF= gi:37991251
TID=Os.9334.1
CNT=36
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9334 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ribosomal protein S10pS20e (OSJNBa0071I20.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033050C15, full insert sequence.
FL= gb:AK121628.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0893011/1140S ribosomal protein S20, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08879OsAffx.6610.1.A1_at11/1110+4566559..4582135Nucleotide-sensitive chloride conductance regulator family protein, expressed
LOC_Os10g08879Os.46716.1.S1_at11/1110+4566559..4582135Nucleotide-sensitive chloride conductance regulator family protein, expressed
LOC_Os10g08879Os.46716.2.S1_at10/1110+4566559..4582135Nucleotide-sensitive chloride conductance regulator family protein, expressed
LOC_Os10g08910Os.28943.1.S1_x_at1/1110+4586535..4589904retrotransposon protein, putative, unclassified
LOC_Os10g08920NANA10+4590530..4596470retrotransposon protein, putative, unclassified
LOC_Os10g08930Os.9334.1.S1_at11/1110+4598127..460112240S ribosomal protein S20, putative, expressed
LOC_Os10g08940Os.7453.1.S1_x_at10/1110+4601979..4608345phosphatidylinositolglycan class O, putative, expressed
LOC_Os10g08940Os.7453.2.S1_x_at10/1110+4601979..4608345phosphatidylinositolglycan class O, putative, expressed
LOC_Os10g08940Os.7453.1.S1_at7/1110+4601979..4608345phosphatidylinositolglycan class O, putative, expressed
LOC_Os10g08950NANA10+4609071..4609820hypothetical protein
LOC_Os10g08960Os.36435.2.S1_x_at6/1110+4614043..4614495pyridoxin biosynthesis protein ER1, putative
LOC_Os10g08960OsAffx.20707.1.S1_x_at3/1110+4614043..4614495pyridoxin biosynthesis protein ER1, putative
LOC_Os10g08960OsAffx.20707.2.S1_x_at1/1110+4614043..4614495pyridoxin biosynthesis protein ER1, putative
LOC_Os10g08960OsAffx.20707.1.S1_at1/1110+4614043..4614495pyridoxin biosynthesis protein ER1, putative
LOC_Os10g08970NANA10+4616361..4619716hAT family dimerisation domain containing protein
LOC_Os10g08980OsAffx.30348.1.S1_at11/1110+4623193..4626048zeaxanthin cleavage oxygenase, putative

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0015935cellular_componentsmall ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9334.1.S1_at--975--3491Chr10:4600760..4600784 (25 bp)
CATGGGATCGTTTCGAGTTCCGCAT
LOC_Os10g08930
Os.9334.1.S1_at--1154--2672Chr11:21171455..21171950 (25 bp)
AAGCGGGTGATCGATCTCATCAGCT
NONE
Os.9334.1.S1_at--766--9591Chr10:4600805..4600829 (25 bp)
TCATCAGCTCCCCAGATGTTGTGAA
LOC_Os10g08930
Os.9334.1.S1_at--726--531Chr10:4600879..4600903 (25 bp)
ATCGCTGATGTGTAATGCTGCCAAA
LOC_Os10g08930
Os.9334.1.S1_at--21--4771Chr10:4600895..4600919 (25 bp)
GCTGCCAAACTAGCACTACCTTAGA
LOC_Os10g08930
Os.9334.1.S1_at--729--10031Chr10:4600916..4600940 (25 bp)
TAGACCTACCTGTCTTGTTTCTCTG
LOC_Os10g08930
Os.9334.1.S1_at--129--9111Chr10:4600939..4600963 (25 bp)
TGCTGCTTAGAATCTCGGTTCCGAT
LOC_Os10g08930
Os.9334.1.S1_at--415--7891Chr10:4600955..4600979 (25 bp)
GGTTCCGATTGCCATGCGTGTAACG
LOC_Os10g08930
Os.9334.1.S1_at--32--491Chr10:4601001..4601025 (25 bp)
ATCTGGGTCTTTTATATGTGCGCGG
LOC_Os10g08930
Os.9334.1.S1_at--714--4131Chr10:4601021..4601045 (25 bp)
CGCGGATGCTATGGATCTTTCTCAT
LOC_Os10g08930
Os.9334.1.S1_at--1084--4411Chr10:4601064..4601088 (25 bp)
GCCAGTTTTGCTTCAACCACATGAA
LOC_Os10g08930
Target Sequence 
CATGGGATCGTTTCGAGTTCCGCATCCACAAGCGGGTGATCGATCTCATCAGCTCCCCAGATGTTGTGAAGCAGATCACC
TCCATCACCATCGAGCCTGGTGTCGAGGTCGAGGTGACGATCGCTGATGTGTAATGCTGCCAAACTAGCACTACCTTAGA
CCTACCTGTCTTGTTTCTCTGCTGCTTAGAATCTCGGTTCCGATTGCCATGCGTGTAACGGACATCCAACTGGTTTAGTG
TATCTGGGTCTTTTATATGTGCGCGGATGCTATGGATCTTTCTCATGTAAGAGGTGTGTAACTCGCCAGTTTTGCTTCAA
CCACATGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9334.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis