Browse Element(s) Details


Os.27180.1.S1_at

Description gb:AK100707.1
DB_XREF= gi:32985916
TID=Os.27180.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27180 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023115C23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023115C23, full insert sequence.
FL= gb:AK100707.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g088301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08780Os.8682.1.S1_a_at11/1110+4523660..4524225expressed protein
LOC_Os10g08780Os.8682.1.S1_at11/1110+4523660..4524225expressed protein
LOC_Os10g08780Os.8682.2.S1_x_at8/1110+4523660..4524225expressed protein
LOC_Os10g08790NANA10+4528942..4529406hypothetical protein
LOC_Os10g08800NANA10+4530512..4531009retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08810Os.27691.1.S1_x_at1/1110+4532950..4534102retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08820NANA10+4534354..4538919retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08830OsAffx.18177.1.S1_s_at11/1110+4541783..4547061hypothetical protein
LOC_Os10g08830Os.41415.1.S1_at2/1110+4541783..4547061hypothetical protein
LOC_Os10g08830Os.27180.1.S1_at1/1110+4541783..4547061hypothetical protein
LOC_Os10g08840Os.10449.1.S1_a_at11/1110+4549322..4554791esterase/lipase/thioesterase family protein, putative, expressed
LOC_Os10g08850OsAffx.6609.1.S1_x_at11/1110+4556819..4558621Nodulin-like family protein, expressed
LOC_Os10g08850OsAffx.6609.1.S1_at11/1110+4556819..4558621Nodulin-like family protein, expressed
LOC_Os10g08879OsAffx.6610.1.A1_at11/1110+4566559..4582135Nucleotide-sensitive chloride conductance regulator family protein, expressed
LOC_Os10g08879Os.46716.1.S1_at11/1110+4566559..4582135Nucleotide-sensitive chloride conductance regulator family protein, expressed
LOC_Os10g08879Os.46716.2.S1_at10/1110+4566559..4582135Nucleotide-sensitive chloride conductance regulator family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27180.1.S1_at--241--7771Chr04:32643044..32643068 (25 bp)
GGTGAAATCTGCACTGATCTGCTAT
NONE
Os.27180.1.S1_at--36--832Chr01:17545415..17545435 (21 bp)
ATGGTAGGTCTAACATCACCGCATT
NONE
Os.27180.1.S1_at--285--371Chr04:32643005..32643029 (25 bp)
ATCACCGCATTATCTAGTTTTGGAG
NONE
Os.27180.1.S1_at--685--8111Chr04:32642947..32642971 (25 bp)
GGACTGGCTCGTTTTGGTCATGAGA
NONE
Os.27180.1.S1_at--208--7131Chr04:32642931..32642955 (25 bp)
GTCATGAGACCTTCACAGATGGGAA
NONE
Os.27180.1.S1_at--489--1311Chr04:32642915..32642939 (25 bp)
AGATGGGAACACGTGGTCGACAAAC
NONE
Os.27180.1.S1_at--1098--8151Chr04:32642878..32642902 (25 bp)
GGAAACACCTGCATGAACGATTTGA
NONE
Os.27180.1.S1_at--615--6671Chr04:32642841..32642865 (25 bp)
GTTGCTTTGTAGTTGCACGAATCTC
NONE
Os.27180.1.S1_at--132--1851Chr04:32642825..32642849 (25 bp)
ACGAATCTCAGGAACGTGTTTTCAT
NONE
Os.27180.1.S1_at--1143--2573Chr10:16249715..16249737 (22 bp)
AACGTGTTTTCATCAGTCATTTCAT
NONE
Os.27180.1.S1_at--915--6416Chr10:16573879..16573903 (25 bp)
GATCTCTATTTTGATGAGCAGCGAC
NONE
Target Sequence 
GGTGAAATCTGCACTGATCTGCTATATGGTAGGTCTAACATCACCGCATTATCTAGTTTTGGAGTGGCTTGACGAAGTAG
TCATGGTTGGGACGTTGGGACTGGCTCGTTTTGGTCATGAGACCTTCACAGATGGGAACACGTGGTCGACAAACGAACAC
CGAATCGGAAACACCTGCATGAACGATTTGAGTTGCATGTAATGTTGCTTTGTAGTTGCACGAATCTCAGGAACGTGTTT
TCATCAGTCATTTCATTGAATTGATCTCTATTTTGATGAGCAGCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27180.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis