Browse Element(s) Details


Os.8682.2.S1_x_at

Description gb:NM_195054.1
DB_XREF= gi:37531467
TID=Os.8682.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.8682 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0081F12.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0081F12.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g087808/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08720OsAffx.30343.1.S1_at10/1110+4499057..4499606hypothetical protein
LOC_Os10g08730OsAffx.30344.1.S1_at11/1110+4501843..4503268hypothetical protein
LOC_Os10g08740Os.2987.3.S1_x_at1/1110+4504225..4507966retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g08750NANA10+4509887..4510673hypothetical protein
LOC_Os10g08760OsAffx.30345.1.S1_at11/1110+4514354..4514626hypothetical protein
LOC_Os10g08780Os.8682.1.S1_a_at11/1110+4523660..4524225expressed protein
LOC_Os10g08780Os.8682.1.S1_at11/1110+4523660..4524225expressed protein
LOC_Os10g08780Os.8682.2.S1_x_at8/1110+4523660..4524225expressed protein
LOC_Os10g08790NANA10+4528942..4529406hypothetical protein
LOC_Os10g08800NANA10+4530512..4531009retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08810Os.27691.1.S1_x_at1/1110+4532950..4534102retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08820NANA10+4534354..4538919retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08830OsAffx.18177.1.S1_s_at11/1110+4541783..4547061hypothetical protein
LOC_Os10g08830Os.41415.1.S1_at2/1110+4541783..4547061hypothetical protein
LOC_Os10g08830Os.27180.1.S1_at1/1110+4541783..4547061hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8682.2.S1_x_at--541--9151Chr10:4523809..4523833 (25 bp)
TGCGCGACGCAGACGACCTACTTCA
LOC_Os10g08780
Os.8682.2.S1_x_at--987--5831Chr10:4523823..4523847 (25 bp)
GACCTACTTCACCAACTGCCTGAGG
LOC_Os10g08780
Os.8682.2.S1_x_at--1055--4371Chr10:4523834..4523858 (25 bp)
CCAACTGCCTGAGGCGCGGGATCAG
LOC_Os10g08780
Os.8682.2.S1_x_at--1124--8591Chr10:4523876..4523900 (25 bp)
TGGTGAAGAACCACTGGTGCCTGTG
LOC_Os10g08780
Os.8682.2.S1_x_at--948--6131Chr10:4523920..4523944 (25 bp)
GAGGTGAAATGCATCCCCGGGCGCC
LOC_Os10g08780
Os.8682.2.S1_x_at--398--9151Chr10:4523947..4523971 (25 bp)
TGCGACGTGCCCAAGGCCCTCAAGA
LOC_Os10g08780
Os.8682.2.S1_x_at--683--891Chr10:4523960..4523984 (25 bp)
AGGCCCTCAAGATCGCCGACATGGA
LOC_Os10g08780
Os.8682.2.S1_x_at--7--851Chr10:4523980..4524004 (25 bp)
ATGGACCTCCCCTGCATGAGAAACC
LOC_Os10g08780
Os.8682.2.S1_x_at--705--5551Chr10:4523999..4524499 (25 bp)
GAAACCTCAGGCAACGATTGAAGAT
NONE
Os.8682.2.S1_x_at--795--10491Chr10:4524492..4524516 (25 bp)
TTGAAGATAACTCACAACCCCTCTA
NONE
Os.8682.2.S1_x_at--1158--2531Chr10:4524500..4524524 (25 bp)
AACTCACAACCCCTCTAGAACTGGA
NONE
Target Sequence 
TGCGCGACGCAGACGACCTACTTCACCAACTGCCTGAGGCGCGGGATCAGGGAAGGCTGCTGCGGGGTGGTGAAGAACCA
CTGGTGCCTGTGCCAGGTGAAGCGGGAGGCGGAGGTGAAATGCATCCCCGGGCGCCGCTGCGACGTGCCCAAGGCCCTCA
AGATCGCCGACATGGACCTCCCCTGCATGAGAAACCTCAGGCAACGATTGAAGATAACTCACAACCCCTCTAGAACTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8682.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis