Browse Element(s) Details


Os.8682.1.S1_a_at

Description gb:AK107891.1
DB_XREF= gi:32993100
TID=Os.8682.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8682 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0081F12.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-E07, full insert sequence.
FL= gb:AK107891.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0878011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08720OsAffx.30343.1.S1_at10/1110+4499057..4499606hypothetical protein
LOC_Os10g08730OsAffx.30344.1.S1_at11/1110+4501843..4503268hypothetical protein
LOC_Os10g08740Os.2987.3.S1_x_at1/1110+4504225..4507966retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g08750NANA10+4509887..4510673hypothetical protein
LOC_Os10g08760OsAffx.30345.1.S1_at11/1110+4514354..4514626hypothetical protein
LOC_Os10g08780Os.8682.1.S1_a_at11/1110+4523660..4524225expressed protein
LOC_Os10g08780Os.8682.1.S1_at11/1110+4523660..4524225expressed protein
LOC_Os10g08780Os.8682.2.S1_x_at8/1110+4523660..4524225expressed protein
LOC_Os10g08790NANA10+4528942..4529406hypothetical protein
LOC_Os10g08800NANA10+4530512..4531009retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08810Os.27691.1.S1_x_at1/1110+4532950..4534102retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08820NANA10+4534354..4538919retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08830OsAffx.18177.1.S1_s_at11/1110+4541783..4547061hypothetical protein
LOC_Os10g08830Os.41415.1.S1_at2/1110+4541783..4547061hypothetical protein
LOC_Os10g08830Os.27180.1.S1_at1/1110+4541783..4547061hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8682.1.S1_a_at--1157--951Chr10:4523804..4523828 (25 bp)
AGGACTGCGCGACGCAGACGACCTA
LOC_Os10g08780
Os.8682.1.S1_a_at--540--9151Chr10:4523809..4523833 (25 bp)
TGCGCGACGCAGACGACCTACTTCA
LOC_Os10g08780
Os.8682.1.S1_a_at--986--5831Chr10:4523823..4523847 (25 bp)
GACCTACTTCACCAACTGCCTGAGG
LOC_Os10g08780
Os.8682.1.S1_a_at--323--10531Chr10:4523830..4523854 (25 bp)
TTCACCAACTGCCTGAGGCGCGGGA
LOC_Os10g08780
Os.8682.1.S1_a_at--1056--4371Chr10:4523834..4523858 (25 bp)
CCAACTGCCTGAGGCGCGGGATCAG
LOC_Os10g08780
Os.8682.1.S1_a_at--527--891Chr10:4523845..4523869 (25 bp)
AGGCGCGGGATCAGGGAAGGCTGCT
LOC_Os10g08780
Os.8682.1.S1_a_at--1125--8591Chr10:4523876..4523900 (25 bp)
TGGTGAAGAACCACTGGTGCCTGTG
LOC_Os10g08780
Os.8682.1.S1_a_at--689--7771Chr10:4523891..4523915 (25 bp)
GGTGCCTGTGCCAGGTGAAGCGGGA
LOC_Os10g08780
Os.8682.1.S1_a_at--947--6131Chr10:4523920..4523944 (25 bp)
GAGGTGAAATGCATCCCCGGGCGCC
LOC_Os10g08780
Os.8682.1.S1_a_at--397--9151Chr10:4523947..4523971 (25 bp)
TGCGACGTGCCCAAGGCCCTCAAGA
LOC_Os10g08780
Os.8682.1.S1_a_at--6--851Chr10:4523980..4524004 (25 bp)
ATGGACCTCCCCTGCATGAGAAACC
LOC_Os10g08780
Target Sequence 
AGGACTGCGCGACGCAGACGACCTACTTCACCAACTGCCTGAGGCGCGGGATCAGGGAAGGCTGCTGCGGGGTGGTGAAG
AACCACTGGTGCCTGTGCCAGGTGAAGCGGGAGNCGGAGGTGAAATGCATCCCCGGGCGCCGCTGCGACGTGCCCAAGGC
CCTCAAGATCGCCGACATGGACCTCCCCTGCATGAGAAACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8682.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis