Browse Element(s) Details


OsAffx.20824.1.S1_at

Description tigr:9638.m00009
TID=OsAffx.20824.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0107010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01044Os.17906.1.S1_at10/1110+30118..42506Tic62 protein, putative, expressed
LOC_Os10g01044OsAffx.6538.1.S1_x_at7/1110+30118..42506Tic62 protein, putative, expressed
LOC_Os10g01044OsAffx.6538.1.S1_at1/1110+30118..42506Tic62 protein, putative, expressed
LOC_Os10g01060Os.26654.2.S1_x_at11/1110+51290..57140U-box domain containing protein, expressed
LOC_Os10g01060Os.26654.1.S1_at11/1110+51290..57140U-box domain containing protein, expressed
LOC_Os10g01060Os.26654.1.S1_a_at11/1110+51290..57140U-box domain containing protein, expressed
LOC_Os10g01070OsAffx.20824.1.S1_at10/1110+59581..60476hypothetical protein
LOC_Os10g01080Os.11788.1.S1_at8/1110+65261..66414pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os10g01080Os.36435.2.S1_x_at5/1110+65261..66414pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os10g01090OsAffx.20823.2.S1_x_at11/1110+69449..70417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01090OsAffx.20823.2.S1_at11/1110+69449..70417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01090OsAffx.22945.1.S1_at1/1110+69449..70417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01100Os.20092.1.S1_at11/1110+79108..81917Protein kinase domain containing protein, expressed
LOC_Os10g01110Os.46869.1.A1_at11/1110+84584..87611Serine carboxypeptidase family protein, expressed
LOC_Os10g01110Os.46869.2.S1_x_at10/1110+84584..87611Serine carboxypeptidase family protein, expressed
LOC_Os10g01110OsAffx.19331.1.S1_at1/1110+84584..87611Serine carboxypeptidase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20824.1.S1_at--611--6191Chr10:60395..60419 (25 bp)
GAGGAAGTCTGCAAGATCACTAGGA
LOC_Os10g01070
OsAffx.20824.1.S1_at--1123--8191Chr10:60393..60417 (25 bp)
GGAAGTCTGCAAGATCACTAGGAAT
LOC_Os10g01070
OsAffx.20824.1.S1_at--1084--8351Chr10:60326..60350 (25 bp)
GGCGGTGGAGGCGTCATCAAATCCA
LOC_Os10g01070
OsAffx.20824.1.S1_at--233--8551Chr10:60321..60345 (25 bp)
TGGAGGCGTCATCAAATCCATGGCG
LOC_Os10g01070
OsAffx.20824.1.S1_at--239--9552Chr10:60248..60268 (21 bp)
TCTTTCTGATGCTCCCTCGATTCCT
LOC_Os10g01070
OsAffx.20824.1.S1_at--1161--3771NONE
CTCGATTCCTGTCCCGTGAGGCGGA
NONE
OsAffx.20824.1.S1_at--688--6571Chr10:59657..59678 (22 bp)
GATTCCTGTCCCGTGAGGCGGACAA
LOC_Os10g01070
OsAffx.20824.1.S1_at--806--9271Chr10:59654..59678 (25 bp)
TCCTGTCCCGTGAGGCGGACAAGAA
LOC_Os10g01070
OsAffx.20824.1.S1_at--399--3871Chr10:59618..59642 (25 bp)
CTGATCTGGCCCCTGAGCTTGGGAC
LOC_Os10g01070
OsAffx.20824.1.S1_at--1108--6371Chr10:59616..59640 (25 bp)
GATCTGGCCCCTGAGCTTGGGACCT
LOC_Os10g01070
OsAffx.20824.1.S1_at--608--8411Chr10:59611..59635 (25 bp)
GGCCCCTGAGCTTGGGACCTCCATA
LOC_Os10g01070
Target Sequence 
GAGGAAGTCTGCAAGATCACTAGGAATGGCGGCGGAGGTGGAGATGGCAGCAAAGGCGGCGGAGGAGGAGGCGGTGGAGG
CGTCATCAAATCCATGGCGGCAGCGGCTAGGGTTCAAGCCGCAACAGCGACGAACTTGTTCGTTCCCCTCCTCTTTCTGA
TGCTCCCTCGATTCCTGTCCCGTGAGGCGGACAAGAAGGCGTGGGGGCCTGATCTGGCCCCTGAGCTTGGGACCTCCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20824.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis