Browse Element(s) Details


Os.11788.1.S1_at

Description gb:AK060323.1
DB_XREF= gi:32970341
TID=Os.11788.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11788 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative pyridoxinepyridoxal 5-phosphate biosynthesis protein (OJ1136E01.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-007-G11, full insert sequence.
FL= gb:AK060323.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g010808/11pyridoxin biosynthesis protein ER1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01044Os.17906.1.S1_at10/1110+30118..42506Tic62 protein, putative, expressed
LOC_Os10g01044OsAffx.6538.1.S1_x_at7/1110+30118..42506Tic62 protein, putative, expressed
LOC_Os10g01044OsAffx.6538.1.S1_at1/1110+30118..42506Tic62 protein, putative, expressed
LOC_Os10g01060Os.26654.2.S1_x_at11/1110+51290..57140U-box domain containing protein, expressed
LOC_Os10g01060Os.26654.1.S1_at11/1110+51290..57140U-box domain containing protein, expressed
LOC_Os10g01060Os.26654.1.S1_a_at11/1110+51290..57140U-box domain containing protein, expressed
LOC_Os10g01070OsAffx.20824.1.S1_at10/1110+59581..60476hypothetical protein
LOC_Os10g01080Os.11788.1.S1_at8/1110+65261..66414pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os10g01080Os.36435.2.S1_x_at5/1110+65261..66414pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os10g01090OsAffx.20823.2.S1_x_at11/1110+69449..70417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01090OsAffx.20823.2.S1_at11/1110+69449..70417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01090OsAffx.22945.1.S1_at1/1110+69449..70417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01100Os.20092.1.S1_at11/1110+79108..81917Protein kinase domain containing protein, expressed
LOC_Os10g01110Os.46869.1.A1_at11/1110+84584..87611Serine carboxypeptidase family protein, expressed
LOC_Os10g01110Os.46869.2.S1_x_at10/1110+84584..87611Serine carboxypeptidase family protein, expressed
LOC_Os10g01110OsAffx.19331.1.S1_at1/1110+84584..87611Serine carboxypeptidase family protein, expressed
LOC_Os10g01120OsAffx.450.1.S1_at11/1110+89181..90171retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0008615biological_processpyridoxine biosynthesis
GO:0009723biological_processresponse to ethylene stimulus
GO:0042819biological_processvitamin B6 biosynthesis
GO:0005829cellular_componentcytosol
GO:0005886cellular_componentplasma membrane
GO:0012505cellular_componentendomembrane system
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11788.1.S1_at--1134--5811Chr10:65423..65447 (25 bp)
GACCCCAAGATACATGTCGAGCGCT
LOC_Os10g01080
Os.11788.1.S1_at--915--2791Chr10:65417..65441 (25 bp)
AAGATACATGTCGAGCGCTTCGCCG
LOC_Os10g01080
Os.11788.1.S1_at--971--4131Chr10:65390..65414 (25 bp)
CGCTCCGACTAGCTAGCAACGTAGA
LOC_Os10g01080
Os.11788.1.S1_at--12--2591Chr10:65373..65397 (25 bp)
AACGTAGAGTGCCATCCTTCCTTTC
LOC_Os10g01080
Os.11788.1.S1_at--643--1691Chr10:65328..65352 (25 bp)
ACCAATTCCTTCCTCATAATTACTG
LOC_Os10g01080
Os.11788.1.S1_at--152--9251Chr10:65322..65346 (25 bp)
TCCTTCCTCATAATTACTGCCATAT
LOC_Os10g01080
Os.11788.1.S1_at--952--10471Chr10:65309..65333 (25 bp)
TTACTGCCATATCTGTGATCGATGG
LOC_Os10g01080
Os.11788.1.S1_at--995--471Chr10:65299..65323 (25 bp)
ATCTGTGATCGATGGTTGTCATATA
LOC_Os10g01080
Os.11788.1.S1_at--1020--4271Chr10:65231..65252 (22 bp)
CCTCCTTTCCACAATGTAAACGCTG
NONE
Os.11788.1.S1_at--524--2591Chr10:65209..65230 (22 bp)
AACGCTGTAATTAATATGCCCCTAA
NONE
Os.11788.1.S1_at--642--9811Chr10:65186..65211 (25 bp)
TAACATCATAAAGGACCATGCACAT
NONE
Target Sequence 
GACCCCAAGATACATGTCGAGCGCTTCGCCGCCCGCTCCGACTAGCTAGCAACGTAGAGTGCCATCCTTCCTTTCCGTCC
CCTGCCACCACTGCCACCAATTCCTTCCTCATAATTACTGCCATATCTGTGATCGATGGTTGTCATATATTGAAAATAAA
CAACAAACATAGTGTATATATAGTACTATATACTCCCTCCTTTCCACAATGTAAACGCTGTAATTAATATGCCCCTAACA
TCATAAAGGACCATGCACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11788.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis