Browse Element(s) Details


OsAffx.6538.1.S1_at

Description tigr:9638.m00006
TID=OsAffx.6538.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g010441/11Tic62 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01010OsAffx.8589.1.S1_at3/1110+6385..6747transposon protein, putative, Ac/Ds sub-class
LOC_Os10g01020OsAffx.5954.4.S1_x_at11/1110+12860..20923retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01020OsAffx.5954.1.S1_x_at7/1110+12860..20923retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01020OsAffx.5954.5.S1_x_at4/1110+12860..20923retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01020OsAffx.5954.3.S1_x_at4/1110+12860..20923retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01020OsAffx.5954.2.S1_at1/1110+12860..20923retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01030OsAffx.6537.1.S1_at11/1110+22819..24231hypothetical protein
LOC_Os10g01030OsAffx.20927.1.S1_x_at1/1110+22819..24231hypothetical protein
LOC_Os10g01044Os.17906.1.S1_at10/1110+30118..42506Tic62 protein, putative, expressed
LOC_Os10g01044OsAffx.6538.1.S1_x_at7/1110+30118..42506Tic62 protein, putative, expressed
LOC_Os10g01044OsAffx.6538.1.S1_at1/1110+30118..42506Tic62 protein, putative, expressed
LOC_Os10g01060Os.26654.2.S1_x_at11/1110+51290..57140U-box domain containing protein, expressed
LOC_Os10g01060Os.26654.1.S1_at11/1110+51290..57140U-box domain containing protein, expressed
LOC_Os10g01060Os.26654.1.S1_a_at11/1110+51290..57140U-box domain containing protein, expressed
LOC_Os10g01070OsAffx.20824.1.S1_at10/1110+59581..60476hypothetical protein
LOC_Os10g01080Os.11788.1.S1_at8/1110+65261..66414pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os10g01080Os.36435.2.S1_x_at5/1110+65261..66414pyridoxin biosynthesis protein ER1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6538.1.S1_at--409--3451NONE
CAGTCAGGAGGCGATTTGTGGACCT
NONE
OsAffx.6538.1.S1_at--400--311Chr10:30715..30960 (25 bp)
ATACCGCTGCGGCAGATATGAGGAG
LOC_Os10g01044
OsAffx.6538.1.S1_at--256--10531NONE
TTCACCATACACAAGTTATATGATG
NONE
OsAffx.6538.1.S1_at--893--3111Chr10:29601..29952 (25 bp)
AATTTGGGCAAGAGTATCACCGAGC
NONE
OsAffx.6538.1.S1_at--335--7611Chr10:29596..29947 (25 bp)
GGGCAAGAGTATCACCGAGCGCCTC
NONE
OsAffx.6538.1.S1_at--197--1351Chr10:29591..29612 (22 bp)
AGAGTATCACCGAGCGCCTCTTCGG
NONE
OsAffx.6538.1.S1_at--853--8511Chr10:29554..29578 (25 bp)
TGGAACTGTGCGCACGCGAGGCAAA
NONE
OsAffx.6538.1.S1_at--868--3351Chr10:29542..29566 (25 bp)
CACGCGAGGCAAAGGCATCGGAGGC
NONE
OsAffx.6538.1.S1_at--936--1411Chr10:29496..29520 (25 bp)
AGAAATCCGTGTGCGCGAGGTGGGC
NONE
OsAffx.6538.1.S1_at--299--8651Chr10:29476..29500 (25 bp)
TGGGCTCGTGCAGCAAGTAGACGAC
NONE
OsAffx.6538.1.S1_at--462--3791Chr10:29472..29496 (25 bp)
CTCGTGCAGCAAGTAGACGACGACG
NONE
Target Sequence 
CAGTCAGGAGGCGATTTGTGGACCTGAAGCCTCCAAGCTCGCCATCGCCGTGCCCACCATCAGCAGCAGCTCCTGCTCCT
ACTTCTACAGATACCGCTGCGGCAGATATGAGGAGCTGAAGCCACCCAGCTCGCCGTCACCGACGCCGCCATCAGCAGCT
TCATCGGCTTCTGTTTCTGCTTCTCCTGATACACCTCCTGCAGCAGCAGCTTCATCGGCGGCGTTGGACTCCAGCGCCAA
CGGCACTCCCATCACCGGCGATCAACTGAATCAGCAGCAGAGTCCTCTTTCACCATACACAAGTTATATGATGATCAAAT
TGAGAAAATTTGGTTTTCAATATATGATGATCAATTTGGGCAAGAGTATCACCGAGCGCCTCTTCGGCGACGGCGAAGGT
GGAACTGTGCGCACGCGAGGCAAAGGCATCGGAGGCGGCAAGGGGGAAGGGGGTGGGAGAAATCCGTGTGCGCGAGGTGG
GCTCGTGCAGCAAGTAGACGACGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6538.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis