Browse Element(s) Details


OsAffx.5954.2.S1_at

Description tigr:9629.m02500
TID=OsAffx.5954.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2575011/11hypothetical protein
LOC_Os09g014001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g103901/11hypothetical protein
LOC_Os03g418401/11Zinc knuckle family protein
LOC_Os07g188901/11retrotransposon protein, putative, unclassified
LOC_Os02g196201/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g224301/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g173001/11Zinc knuckle family protein
LOC_Os10g010201/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g187701/11retrotransposon protein, putative, unclassified
LOC_Os09g080201/11retrotransposon protein, putative, unclassified
LOC_Os03g357881/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g124101/11Zinc knuckle family protein
LOC_Os03g335301/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g428901/11hypothetical protein
LOC_Os01g161601/11retrotransposon protein, putative, unclassified
LOC_Os07g055401/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g072201/11Zinc knuckle family protein
LOC_Os12g259901/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g397601/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25710NANA1+14554229..14555648transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g25720Os.49396.1.S1_x_at11/111+14559082..14564448NB-ARC domain containing protein, expressed
LOC_Os01g25720Os.49396.1.S2_at11/111+14559082..14564448NB-ARC domain containing protein, expressed
LOC_Os01g25720Os.49396.2.S1_x_at11/111+14559082..14564448NB-ARC domain containing protein, expressed
LOC_Os01g25730OsAffx.21100.1.S1_at6/111+14565395..14565859retrotransposon protein, putative, unclassified
LOC_Os01g25740OsAffx.23395.1.S1_s_at11/111+14570237..14574235powdery mildew resistance protein PM3b, putative
LOC_Os01g25740OsAffx.23395.2.S1_at11/111+14570237..14574235powdery mildew resistance protein PM3b, putative
LOC_Os01g25750OsAffx.5954.2.S1_at11/111+14579454..14580585hypothetical protein
LOC_Os01g25760Os.47748.1.S1_at11/111+14581600..14585457powdery mildew resistance protein PM3b, putative, expressed
LOC_Os01g25770OsAffx.8865.1.S1_at11/111+14587655..14588451hypothetical protein
LOC_Os01g25780OsAffx.8864.1.S1_at11/111+14589989..14591513retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g25789Os.37711.3.S1_x_at11/111+14591781..14591978NA
LOC_Os01g25800Os.37711.2.S1_at11/111+14593803..14594377expressed protein
LOC_Os01g25810OsAffx.11205.1.S1_at11/111+14595028..14599603NB-ARC domain containing protein, expressed
LOC_Os01g25820Os.10600.1.S1_a_at11/111+14603777..14610415respiratory burst oxidase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5954.2.S1_at--449--1920Chr12:15088184..15088295 (25 bp)
ATAGTCGAAAAAGGCGCCTTGAGTG
LOC_Os12g25990
OsAffx.5954.2.S1_at--509--7751Chr01:14579650..14579674 (25 bp)
GGTGATTTGGGATACACTTCGCAAC
LOC_Os01g25750
OsAffx.5954.2.S1_at--1130--8611Chr01:14579657..14579681 (25 bp)
TGGGATACACTTCGCAACTTGCATG
LOC_Os01g25750
OsAffx.5954.2.S1_at--305--691Chr01:14579831..14579855 (25 bp)
ATGACCGATAAGGTTGTGATCAAAA
LOC_Os01g25750
OsAffx.5954.2.S1_at--1151--9691Chr01:14579931..14579955 (25 bp)
TCACACCTTATGACTATATGGCAGC
LOC_Os01g25750
OsAffx.5954.2.S1_at--156--2451Chr01:14579965..14579989 (25 bp)
AAAATGTCATATATGCAGCCTAAAA
LOC_Os01g25750
OsAffx.5954.2.S1_at--1136--351Chr01:14579990..14580014 (25 bp)
ATAATACAAGATACCAGCAGCAGCG
LOC_Os01g25750
OsAffx.5954.2.S1_at--574--3391Chr01:14580010..14580034 (25 bp)
CAGCGGAGCTGTGCAGTCGTGCAAA
LOC_Os01g25750
OsAffx.5954.2.S1_at--434--5031Chr01:14580022..14580046 (25 bp)
GCAGTCGTGCAAATGTGCTCACCGA
LOC_Os01g25750
OsAffx.5954.2.S1_at--1143--7291Chr01:14580036..14580060 (25 bp)
GTGCTCACCGAAATACTTGCGTAGT
LOC_Os01g25750
OsAffx.5954.2.S1_at--1057--6071Chr01:14580528..14580552 (25 bp)
GAGTTTGGGAGCAATCCTGCAACCA
LOC_Os01g25750
Target Sequence 
ATAGTCGAAAAAGGCGCCTTGAGTGGAAGTGAGTTCAACCGGGTGGACGGCATTGAGAGTGCCAAGGTGATTTGGGATAC
ACTTCGCAACTTGCATGAAGGCACGGATAGCGTTCGTGAGTCCAAGGTGGAGATCCTAAAGGGGCAATATGAGCGGTTTG
TGATGTTGGATGGTGAGAGCCCAAGTGACATGTATGATCGATTGAGCAAGATCATCAATGAGATCAAGGGGCTTGAGTCC
AAGGACATGACCGATAAGGTTGTGATCAAAAAGATGGTTCGGGCAATCACTCCAAGGAACTCTACCTTGGTGACCATCAT
TCGTGAGCGTCCAGACTACAAGACTCTCACACCTTATGACTATATGGCAGCTATAATTATAAAATGTCATATATGCAGCC
TAAAAATAATACAAGATACCAGCAGCAGCGGAGCTGTGCAGTCGTGCAAATGTGCTCACCGAAATACTTGCGTAGTACGC
GTAATAAAGNTTNGNANNNNTNNTNNNNNCAANANNTNNNNNNNANNNNNNNANCAGAGTTTGGGAGCAATCCTGCAACC
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5954.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis