Browse Element(s) Details


Os.49396.1.S1_x_at

Description gb:AK063509.1
DB_XREF= gi:32973527
TID=Os.49396.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49396 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013110O03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-F10, full insert sequence.
FL= gb:AK063509.1 gb:AK066435.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2572011/11NB-ARC domain containing protein, expressed
LOC_Os03g632401/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25670Os.47463.1.S1_x_at5/111+14533588..14534791transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25670Os.14491.2.S1_x_at3/111+14533588..14534791transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g25679Os.45173.1.S1_x_at3/111+14538179..14542456retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g25679OsAffx.20329.1.S1_at3/111+14538179..14542456retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g25679OsAffx.22385.1.S1_x_at1/111+14538179..14542456retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g25688Os.46862.1.S1_at2/111+14544721..14547162retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g25700NANA1+14549702..14552729transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g25710NANA1+14554229..14555648transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g25720Os.49396.1.S1_x_at11/111+14559082..14564448NB-ARC domain containing protein, expressed
LOC_Os01g25720Os.49396.1.S2_at11/111+14559082..14564448NB-ARC domain containing protein, expressed
LOC_Os01g25720Os.49396.2.S1_x_at11/111+14559082..14564448NB-ARC domain containing protein, expressed
LOC_Os01g25730OsAffx.21100.1.S1_at6/111+14565395..14565859retrotransposon protein, putative, unclassified
LOC_Os01g25740OsAffx.23395.1.S1_s_at11/111+14570237..14574235powdery mildew resistance protein PM3b, putative
LOC_Os01g25740OsAffx.23395.2.S1_at11/111+14570237..14574235powdery mildew resistance protein PM3b, putative
LOC_Os01g25750OsAffx.5954.2.S1_at11/111+14579454..14580585hypothetical protein
LOC_Os01g25760Os.47748.1.S1_at11/111+14581600..14585457powdery mildew resistance protein PM3b, putative, expressed
LOC_Os01g25770OsAffx.8865.1.S1_at11/111+14587655..14588451hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49396.1.S1_x_at--446--6451Chr01:14562537..14562561 (25 bp)
GATCAAGCCCGCTGAGCTAGTTCAA
LOC_Os01g25720
Os.49396.1.S1_x_at--436--771Chr01:14562453..14562477 (25 bp)
ATGTGCTGGGTTGCCATTGGCAGCA
LOC_Os01g25720
Os.49396.1.S1_x_at--914--2711Chr01:14562427..14562451 (25 bp)
AAGCACTAGGTTCTGTACTTTATAC
LOC_Os01g25720
Os.49396.1.S1_x_at--382--7011Chr01:14562413..14562437 (25 bp)
GTACTTTATACCAAGACCAGCCTGG
LOC_Os01g25720
Os.49396.1.S1_x_at--229--3411Chr01:14562363..14562387 (25 bp)
CAGCAGTATCTGCACTAAGGAGACT
LOC_Os01g25720
Os.49396.1.S1_x_at--620--2691Chr01:14562320..14562344 (25 bp)
AAGCTCAGCTATGACAATTTGCCGT
LOC_Os01g25720
Os.49396.1.S1_x_at--3--10711Chr01:14562302..14562326 (25 bp)
TTGCCGTCACATATGAAGCAGTGCT
LOC_Os01g25720
Os.49396.1.S1_x_at--511--1132Chr03:35669754..35669778 (25 bp)
AGTGCTTTGCTTTCTGTGCTATTTT
LOC_Os03g63240
Os.49396.1.S1_x_at--114--1551Chr01:14562158..14562182 (25 bp)
AGCTTCTAGATCTTTCTTTCAGGAG
LOC_Os01g25720
Os.49396.1.S1_x_at--822--5151Chr01:14562102..14562126 (25 bp)
GCAACCATGGGCATTGTTCCAGAAT
LOC_Os01g25720
Os.49396.1.S1_x_at--210--651Chr01:14562055..14562079 (25 bp)
ATGCATGATGTTGCCACTTCAATTA
LOC_Os01g25720
Target Sequence 
GATCAAGCCCGCTGAGCTAGTTCAAATGGATGATAAGTCATTATTATCTAAAAAGAAGGAAATGATTGATCAGTTTGTGG
AGAGATGTGCTGGGTTGCCATTGGCAGCAAAAGCACTAGGTTCTGTACTTTATACCAAGACCAGCCTGGAAGAATGGGAG
GCAGTATTAAGAAGCAGCAGTATCTGCACTAAGGAGACTGGAATTTTACCAATACTNAAGCTCAGCTATGACAATTTGCC
GTCACATATGAAGCAGTGCTTTGCTTTCTGTGCTATTTTTCCTAAGGATTACGAGATTGATANNNNNNAGNNNNNNNNNN
NNNNGATCGCAAATGGATTAATCCCAGAAATAAAAGATATCCGCCTTGAAACCACNGGAGAAGGTATTTTCAATGANTTA
GCTTCTAGATCTTTCTTTCAGGAGTTGAAGCGAGTCCGATTTGACAAATATANAAGCAACCATGGGCATTGTTCCAGAAT
CATATGTAAGATGCACGATCTTATGCATGATGTTGCCACTTCAATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49396.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis