Browse Element(s) Details


OsAffx.23395.1.S1_s_at

Description gb:NM_194003.1
DB_XREF= gi:34915089
GEN=P0514H03.24
TID=OsAffx.23395.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0514H03.24 (P0514H03.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2574011/11powdery mildew resistance protein PM3b, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25688Os.46862.1.S1_at2/111+14544721..14547162retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g25700NANA1+14549702..14552729transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g25710NANA1+14554229..14555648transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g25720Os.49396.1.S1_x_at11/111+14559082..14564448NB-ARC domain containing protein, expressed
LOC_Os01g25720Os.49396.1.S2_at11/111+14559082..14564448NB-ARC domain containing protein, expressed
LOC_Os01g25720Os.49396.2.S1_x_at11/111+14559082..14564448NB-ARC domain containing protein, expressed
LOC_Os01g25730OsAffx.21100.1.S1_at6/111+14565395..14565859retrotransposon protein, putative, unclassified
LOC_Os01g25740OsAffx.23395.1.S1_s_at11/111+14570237..14574235powdery mildew resistance protein PM3b, putative
LOC_Os01g25740OsAffx.23395.2.S1_at11/111+14570237..14574235powdery mildew resistance protein PM3b, putative
LOC_Os01g25750OsAffx.5954.2.S1_at11/111+14579454..14580585hypothetical protein
LOC_Os01g25760Os.47748.1.S1_at11/111+14581600..14585457powdery mildew resistance protein PM3b, putative, expressed
LOC_Os01g25770OsAffx.8865.1.S1_at11/111+14587655..14588451hypothetical protein
LOC_Os01g25780OsAffx.8864.1.S1_at11/111+14589989..14591513retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g25789Os.37711.3.S1_x_at11/111+14591781..14591978NA
LOC_Os01g25800Os.37711.2.S1_at11/111+14593803..14594377expressed protein
LOC_Os01g25810OsAffx.11205.1.S1_at11/111+14595028..14599603NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23395.1.S1_s_at--857--8031Chr01:14571419..14571443 (25 bp)
GGAGTTGGCAACTCTACCTGAAGCA
LOC_Os01g25740
OsAffx.23395.1.S1_s_at--116--6011Chr01:14571386..14571410 (25 bp)
GAGAGTATTAGTATTTCCCGAAGAT
LOC_Os01g25740
OsAffx.23395.1.S1_s_at--721--851Chr01:14571328..14571352 (25 bp)
ATGGCAACACTGTCCGATGTCAGAT
LOC_Os01g25740
OsAffx.23395.1.S1_s_at--1--9051Chr01:14571296..14571320 (25 bp)
TGCAGCTTCTTCCTCACAAGTACAA
LOC_Os01g25740
OsAffx.23395.1.S1_s_at--1087--7651Chr01:14571200..14571224 (25 bp)
GGGATGTTACTTCTTCTGTATGGAT
LOC_Os01g25740
OsAffx.23395.1.S1_s_at--692--371Chr01:14571142..14571166 (25 bp)
ATCAACTGCTGCAACGAACTCGTCT
LOC_Os01g25740
OsAffx.23395.1.S1_s_at--737--5471Chr01:14571127..14571151 (25 bp)
GAACTCGTCTATTGGCCACTGAAAC
LOC_Os01g25740
OsAffx.23395.1.S1_s_at--277--2491Chr01:14571105..14571129 (25 bp)
AACAGCTCCAATGCTTGGTATCCTT
LOC_Os01g25740
OsAffx.23395.1.S1_s_at--966--3891Chr01:14571039..14571063 (25 bp)
CTGGTGATGTTCTAGAAGCGCCATT
LOC_Os01g25740
OsAffx.23395.1.S1_s_at--481--2451Chr01:14571009..14571033 (25 bp)
AAAATCAGCTACTCCCATGCTTGGA
LOC_Os01g25740
OsAffx.23395.1.S1_s_at--906--3171Chr01:14570958..14570982 (25 bp)
AATTGGTTGAGGTTCTCATCCTTCC
LOC_Os01g25740
Target Sequence 
GGAGTTGGCAACTCTACCTGAAGCACCAAAGCTGAGAGTATTAGTATTTCCCGAAGATAAATCATTGATGTGGTTATCCA
TAGCAAGATATATGGCAACACTGTCCGATGTCAGATTAACAATTGCAGCTTCTTCCTCACAAGTACAATGTGCAATACAA
CAGGTCAGTGGTACAGAAGAATTTAGTCATAAAACTTCTAATGCAACTATGGAACTACGGGGATGTTACTTCTTCTGTAT
GGATTGGGAATGTTTTGTGAACCTGCAAGATTTAGTAATCAACTGCTGCAACGAACTCGTCTATTGGCCACTGAAACAGC
TCCAATGCTTGGTATCCTTGAAAAGATTAACAGTTTATTCTTGCAATAATCTGACTAAATCTGGTGATGTTCTAGAAGCG
CCATTAGAAAAAAATCAGCTACTCCCATGCTTGGAGTATATAGAAATAAAAGATTGTCCCAAATTGGTTGAGGTTCTCAT
CCTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23395.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis