Browse Element(s) Details


Os.37711.2.S1_at

Description gb:AK062321.1
DB_XREF= gi:32972339
TID=Os.37711.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37711 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0514H03.29 (P0514H03.29), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-C11, full insert sequence.
FL= gb:AK062321.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2580011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25740OsAffx.23395.1.S1_s_at11/111+14570237..14574235powdery mildew resistance protein PM3b, putative
LOC_Os01g25740OsAffx.23395.2.S1_at11/111+14570237..14574235powdery mildew resistance protein PM3b, putative
LOC_Os01g25750OsAffx.5954.2.S1_at11/111+14579454..14580585hypothetical protein
LOC_Os01g25760Os.47748.1.S1_at11/111+14581600..14585457powdery mildew resistance protein PM3b, putative, expressed
LOC_Os01g25770OsAffx.8865.1.S1_at11/111+14587655..14588451hypothetical protein
LOC_Os01g25780OsAffx.8864.1.S1_at11/111+14589989..14591513retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g25789Os.37711.3.S1_x_at11/111+14591781..14591978NA
LOC_Os01g25800Os.37711.2.S1_at11/111+14593803..14594377expressed protein
LOC_Os01g25810OsAffx.11205.1.S1_at11/111+14595028..14599603NB-ARC domain containing protein, expressed
LOC_Os01g25820Os.10600.1.S1_a_at11/111+14603777..14610415respiratory burst oxidase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37711.2.S1_at--940--2171Chr01:14593892..14593916 (25 bp)
ACACAGGGACCACACATGAGTTCTC
LOC_Os01g25800
Os.37711.2.S1_at--948--691Chr01:14593907..14593931 (25 bp)
ATGAGTTCTCCTCAGTCGCTAGTGC
LOC_Os01g25800
Os.37711.2.S1_at--688--10451Chr01:14593942..14593966 (25 bp)
TTAGCTCTAGATGCAACCAGACGGT
LOC_Os01g25800
Os.37711.2.S1_at--137--7771Chr01:14594037..14594061 (25 bp)
GGTGATGGCAGCTCCGAAGACTGAT
LOC_Os01g25800
Os.37711.2.S1_at--97--7551Chr01:14594096..14594120 (25 bp)
GTGGCTCTGAACTCTCAGGACCGAA
LOC_Os01g25800
Os.37711.2.S1_at--948--211Chr01:14594124..14594148 (25 bp)
ATTTGGGCGTGTGATATCGCTAGCT
LOC_Os01g25800
Os.37711.2.S1_at--742--531Chr01:14594139..14594163 (25 bp)
ATCGCTAGCTAGGTTTTCAGGTGGC
LOC_Os01g25800
Os.37711.2.S1_at--813--4811Chr01:14594162..14594186 (25 bp)
GCTCATGCCTTGGTCGATTCTTTGA
LOC_Os01g25800
Os.37711.2.S1_at--201--6551Chr01:14594177..14594201 (25 bp)
GATTCTTTGACAGCTTCGTCTGGTC
LOC_Os01g25800
Os.37711.2.S1_at--529--3791Chr01:14594220..14594244 (25 bp)
CTCCGGGAGGATATTTGCTTGGTTT
LOC_Os01g25800
Os.37711.2.S1_at--846--151Chr01:14594328..14594352 (25 bp)
ATTATGCTGTATTTCTACTTGCTGA
LOC_Os01g25800
Target Sequence 
ACACAGGGACCACACATGAGTTCTCCTCAGTCGCTAGTGCCCCCTATCAATTAGCTCTAGATGCAACCAGACGGTGGGAA
TTCTGGGTCATTGGGGGGTACTTACCTGGGGTTTTGCAGTTAGGTGCATTGCATCCTTGGTTGCTGGTGATGGCAGCTCC
GAAGACTGATGGAATTGGGGTTTTTGCAGTTGGATGCGTCGTCGGTGGCTCTGAACTCTCAGGACCGAAGAAATTTGGGC
GTGTGATATCGCTAGCTAGGTTTTCAGGTGGCTCATGCCTTGGTCGATTCTTTGACAGCTTCGTCTGGTCTTTTTTTTTT
TTGGCTGCCTCCGGGAGGATATTTGCTTGGTTTGAAACGTGATTTATCAGCTCTAGTGATAGGTAAGTATATATTGTATT
CGAGGAAAGAAGTGGTAACATGTTGGACCTGTATTAATTATGCTGTATTTCTACTTGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37711.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis