Browse Element(s) Details


OsAffx.8864.1.S1_at

Description gb:NM_194007.1
DB_XREF= gi:34915097
GEN=P0514H03.28
TID=OsAffx.8864.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0514H03.28 (P0514H03.28), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2578011/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g0570011/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g2225010/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g296608/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g365808/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g110808/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g201208/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g331008/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g332405/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25730OsAffx.21100.1.S1_at6/111+14565395..14565859retrotransposon protein, putative, unclassified
LOC_Os01g25740OsAffx.23395.1.S1_s_at11/111+14570237..14574235powdery mildew resistance protein PM3b, putative
LOC_Os01g25740OsAffx.23395.2.S1_at11/111+14570237..14574235powdery mildew resistance protein PM3b, putative
LOC_Os01g25750OsAffx.5954.2.S1_at11/111+14579454..14580585hypothetical protein
LOC_Os01g25760Os.47748.1.S1_at11/111+14581600..14585457powdery mildew resistance protein PM3b, putative, expressed
LOC_Os01g25770OsAffx.8865.1.S1_at11/111+14587655..14588451hypothetical protein
LOC_Os01g25780OsAffx.8864.1.S1_at11/111+14589989..14591513retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g25789Os.37711.3.S1_x_at11/111+14591781..14591978NA
LOC_Os01g25800Os.37711.2.S1_at11/111+14593803..14594377expressed protein
LOC_Os01g25810OsAffx.11205.1.S1_at11/111+14595028..14599603NB-ARC domain containing protein, expressed
LOC_Os01g25820Os.10600.1.S1_a_at11/111+14603777..14610415respiratory burst oxidase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8864.1.S1_at--286--110Chr10:2858396..2858420 (25 bp)
GTAGTAACTACCTCACTTGGGCATT
LOC_Os10g05700
OsAffx.8864.1.S1_at--212--558Chr10:2858601..2858625 (25 bp)
ATCCCTGAAGGATCGCTTTGACCAG
LOC_Os10g05700
OsAffx.8864.1.S1_at--194--5198Chr10:2858625..2858649 (25 bp)
GCAAGGGTCAATTGTGCTCCCACAG
LOC_Os10g05700
OsAffx.8864.1.S1_at--48--8258Chr10:2858649..2858673 (25 bp)
GGCACAACATGACTGGATCACCCTA
LOC_Os10g05700
OsAffx.8864.1.S1_at--482--1817Chr10:2858668..2858692 (25 bp)
ACCCTACGCTTCCAAGACTACAAGT
LOC_Os10g05700
OsAffx.8864.1.S1_at--1139--6676Chr10:2858736..2858760 (25 bp)
GTTGCGTTTATGTGGCCTGAAGATC
LOC_Os10g05700
OsAffx.8864.1.S1_at--396--9676Chr10:2858759..2858783 (25 bp)
TCACTGACGCTGAGATGATCGAGAA
LOC_Os10g05700
OsAffx.8864.1.S1_at--14--6399Chr10:2858775..2858799 (25 bp)
GATCGAGAAAACCTTATCTACCTTT
LOC_Os10g05700
OsAffx.8864.1.S1_at--1038--9977Chr10:2858793..2858817 (25 bp)
TACCTTTCATCCCAACAACATAGTG
LOC_Os10g05700
OsAffx.8864.1.S1_at--261--6995Chr10:2858844..2858868 (25 bp)
GTACCCGAAGTACTCTGATCTTATC
LOC_Os10g05700
OsAffx.8864.1.S1_at--475--6416Chr10:2858860..2858884 (25 bp)
GATCTTATCTCAGTCCTGTTAGTTG
LOC_Os10g05700
Target Sequence 
GTAGTAACTACCTCACTTGGGCATTGGACGTTNAGATTAAACTCGACTCCATGNGTCTCGATNATANTATTGTNNTGCCC
GAAGTTGGCACNGTGGAGTCTACGAAGGCCGAGNAAGCAAAGGCATTGCATTTCTTGCGCCACCATCTCCACCNANANCT
GAAGTCTGAGTATATGACCGAGAAAGATCCACTGGTATTNTGGCAATCCCTGAAGGATCGCTTTGACCAGCAAGGGTCAA
TTGTGCTCCCACAGGCACAACATGACTGGATCACCCTACGCTTCCAAGACTACAAGTCTGTGGNGNCGTATAACTCTGCC
CTNCATAGGATCATTTCTCAGTTGCGTTTATGTGGCCTGAAGATCACTGACGCTGAGATGATCGAGAAAACCTTATCTAC
CTTTCATCCCAACAACATAGTGCTGCAACAGCAATACAGGAACTCAAAGTACCCGAAGTACTCTGATCTTATCTCAGTCC
TGTTAGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8864.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis