Browse Element(s) Details


Os.47748.1.S1_at

Description gb:NM_194005.1
DB_XREF= gi:34915093
GEN=P0514H03.26
TID=Os.47748.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.47748 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0514H03.26 (P0514H03.26), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0514H03.26 (P0514H03.26), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2576011/11powdery mildew resistance protein PM3b, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g25720Os.49396.1.S1_x_at11/111+14559082..14564448NB-ARC domain containing protein, expressed
LOC_Os01g25720Os.49396.1.S2_at11/111+14559082..14564448NB-ARC domain containing protein, expressed
LOC_Os01g25720Os.49396.2.S1_x_at11/111+14559082..14564448NB-ARC domain containing protein, expressed
LOC_Os01g25730OsAffx.21100.1.S1_at6/111+14565395..14565859retrotransposon protein, putative, unclassified
LOC_Os01g25740OsAffx.23395.1.S1_s_at11/111+14570237..14574235powdery mildew resistance protein PM3b, putative
LOC_Os01g25740OsAffx.23395.2.S1_at11/111+14570237..14574235powdery mildew resistance protein PM3b, putative
LOC_Os01g25750OsAffx.5954.2.S1_at11/111+14579454..14580585hypothetical protein
LOC_Os01g25760Os.47748.1.S1_at11/111+14581600..14585457powdery mildew resistance protein PM3b, putative, expressed
LOC_Os01g25770OsAffx.8865.1.S1_at11/111+14587655..14588451hypothetical protein
LOC_Os01g25780OsAffx.8864.1.S1_at11/111+14589989..14591513retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g25789Os.37711.3.S1_x_at11/111+14591781..14591978NA
LOC_Os01g25800Os.37711.2.S1_at11/111+14593803..14594377expressed protein
LOC_Os01g25810OsAffx.11205.1.S1_at11/111+14595028..14599603NB-ARC domain containing protein, expressed
LOC_Os01g25820Os.10600.1.S1_a_at11/111+14603777..14610415respiratory burst oxidase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47748.1.S1_at--636--4791Chr01:14582347..14582371 (25 bp)
GCTCCTACCACGTCTGAAATTTCTA
LOC_Os01g25760
Os.47748.1.S1_at--796--3111Chr01:14582330..14582354 (25 bp)
AATTTCTAGGAATACGCAACTGCCA
LOC_Os01g25760
Os.47748.1.S1_at--712--5951Chr01:14582295..14582319 (25 bp)
GAGATATTTAATCTTCCCTGGTCCC
LOC_Os01g25760
Os.47748.1.S1_at--335--4271Chr01:14582279..14582303 (25 bp)
CCTGGTCCCTCAAGACTATTGACAT
LOC_Os01g25760
Os.47748.1.S1_at--609--2071Chr01:14582258..14582282 (25 bp)
ACATATATCGCTGTCCTAGGTTGAA
LOC_Os01g25760
Os.47748.1.S1_at--1001--5031Chr01:14582187..14582211 (25 bp)
GCAGAGCAGCTCACCACATTATTGA
LOC_Os01g25760
Os.47748.1.S1_at--16--2451Chr01:14582160..14582184 (25 bp)
AAAAGGATGCCAGACCCATCATCAT
LOC_Os01g25760
Os.47748.1.S1_at--663--8071Chr01:14582116..14582140 (25 bp)
GGAGCATCTTCTACCATGCCTAGAA
LOC_Os01g25760
Os.47748.1.S1_at--928--1551Chr01:14582067..14582091 (25 bp)
AGCTTCACAAAGGTTCCTGATCTCC
LOC_Os01g25760
Os.47748.1.S1_at--32--8771Chr01:14582018..14582042 (25 bp)
TGTATAACTGCCCTAACGTCCGATT
LOC_Os01g25760
Os.47748.1.S1_at--406--5411Chr01:14581984..14582008 (25 bp)
GAAGCTGGATGCACTCGACTCCTTA
LOC_Os01g25760
Target Sequence 
GCTCCTACCACGTCTGAAATTTCTAGGAATACGCAACTGCCAAGAGTTAACAGAGATATTTAATCTTCCCTGGTCCCTCA
AGACTATTGACATATATCGCTGTCCTAGGTTGAAATCGATATATGGTAAACAGGAGGATAGTGAATCGGGAAGTGCACAT
GCAGAGCAGCTCACCACATTATTGAGCAAAAGGATGCCAGACCCATCATCATCAGCAGCAGCTGCAGCAACGGAGCATCT
TCTACCATGCCTAGAACACCTTAACATAGGGCACTGTGATAGCTTCACAAAGGTTCCTGATCTCCCACCATCGCTCCAAA
TATTGCACATGTATAACTGCCCTAACGTCCGATTTCTATCGGGGAAGCTGGATGCACTCGACTCCTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47748.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis