Browse Element(s) Details


Os.17906.1.S1_at

Description gb:AK065110.1
DB_XREF= gi:32975128
TID=Os.17906.1
CNT=28
FEA=FLmRNA
TIER=FL+Stack
STK=9
UG=Os.17906 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative dehydrogenase (OJ1136E01.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001O01, full insert sequence.
FL= gb:AK065110.1 gb:AK104934.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0104410/11Tic62 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01010OsAffx.8589.1.S1_at3/1110+6385..6747transposon protein, putative, Ac/Ds sub-class
LOC_Os10g01020OsAffx.5954.4.S1_x_at11/1110+12860..20923retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01020OsAffx.5954.1.S1_x_at7/1110+12860..20923retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01020OsAffx.5954.5.S1_x_at4/1110+12860..20923retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01020OsAffx.5954.3.S1_x_at4/1110+12860..20923retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01020OsAffx.5954.2.S1_at1/1110+12860..20923retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01030OsAffx.6537.1.S1_at11/1110+22819..24231hypothetical protein
LOC_Os10g01030OsAffx.20927.1.S1_x_at1/1110+22819..24231hypothetical protein
LOC_Os10g01044Os.17906.1.S1_at10/1110+30118..42506Tic62 protein, putative, expressed
LOC_Os10g01044OsAffx.6538.1.S1_x_at7/1110+30118..42506Tic62 protein, putative, expressed
LOC_Os10g01044OsAffx.6538.1.S1_at1/1110+30118..42506Tic62 protein, putative, expressed
LOC_Os10g01060Os.26654.2.S1_x_at11/1110+51290..57140U-box domain containing protein, expressed
LOC_Os10g01060Os.26654.1.S1_at11/1110+51290..57140U-box domain containing protein, expressed
LOC_Os10g01060Os.26654.1.S1_a_at11/1110+51290..57140U-box domain containing protein, expressed
LOC_Os10g01070OsAffx.20824.1.S1_at10/1110+59581..60476hypothetical protein
LOC_Os10g01080Os.11788.1.S1_at8/1110+65261..66414pyridoxin biosynthesis protein ER1, putative, expressed
LOC_Os10g01080Os.36435.2.S1_x_at5/1110+65261..66414pyridoxin biosynthesis protein ER1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17906.1.S1_at--765--4751Chr10:30931..30955 (25 bp)
GCTGCGGCAGGTTCATCGTCAACGT
LOC_Os10g01044
Os.17906.1.S1_at--74--9611Chr10:30919..30943 (25 bp)
TCATCGTCAACGTTGAACTCCAGCG
LOC_Os10g01044
Os.17906.1.S1_at--252--9671Chr10:30879..30903 (25 bp)
TCAGCGTGGATCAACCGAAGCAGCA
LOC_Os10g01044
Os.17906.1.S1_at--323--891NONE
AGGCCTCTTTCACCGTACACTAGAT
NONE
Os.17906.1.S1_at--111--3371Chr10:30713..30864 (25 bp)
CACCGTACACTAGATATGAGGAGCT
LOC_Os10g01044
Os.17906.1.S1_at--254--7851Chr10:30419..30443 (25 bp)
GGTACGAGGAACTCAAGCCTCCAAG
LOC_Os10g01044
Os.17906.1.S1_at--694--3671Chr10:30339..30363 (25 bp)
CTATATTCGTTTTTTGCCTTGGCCA
LOC_Os10g01044
Os.17906.1.S1_at--123--4451Chr10:30324..30348 (25 bp)
GCCTTGGCCAATCATCACTCAAGAT
LOC_Os10g01044
Os.17906.1.S1_at--405--3331Chr10:30309..30333 (25 bp)
CACTCAAGATCCAGTTATCCACTAC
LOC_Os10g01044
Os.17906.1.S1_at--245--6371Chr10:30302..30326 (25 bp)
GATCCAGTTATCCACTACTAGTTAA
LOC_Os10g01044
Os.17906.1.S1_at--825--9891Chr10:30287..30311 (25 bp)
TACTAGTTAATTACCTTCATCCAGG
LOC_Os10g01044
Target Sequence 
GCTGCGGCAGGTTCATCGTCAACGTTGAACTCCAGCGCCACCGGCACCCCCATCAGCGTGGATCAACCGAAGCAGCAGCA
GAGGCCTCTTTCACCGTACACTAGATATGAGGAGCTGAAGCCACCCAGCTCGCCGTCACCGACGCCGCCATCAGCAGCTT
CATCGGCTTCTGTTTCTGCTTCTCCTGATACACCTCCTGCAGCAGCAGCTTCATCGGCGGCGTTGGACTCCAGCGCCAAC
GGCACTCCCATCACCGGCGATCAACTGAATCAGCAGCAGAGTCCTCTTTCACCATACACAAGGTACGAGGAACTCAAGCC
TCCAAGCTCGCCAACCCCATCTACCCCCAAACTATAGAAGCAAGATAGTTAGCATATAAGGCTATATTCGTTTTTTGCCT
TGGCCAATCATCACTCAAGATCCAGTTATCCACTACTAGTTAATTACCTTCATCCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17906.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis