Browse Element(s) Details


OsAffx.448.1.S1_x_at

Description gb:NM_194482.1
DB_XREF= gi:37530323
TID=OsAffx.448.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative polyprotein (OSJNBa0046L02.11), mRNA.
PROD=putative polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g011646/11retrotransposon protein, putative, unclassified
LOC_Os12g184001/11retrotransposon protein, putative, unclassified
LOC_Os06g305101/11retrotransposon protein, putative, unclassified
LOC_Os05g081901/11retrotransposon protein, putative, unclassified
LOC_Os11g154401/11retrotransposon protein, putative, unclassified
LOC_Os06g245701/11retrotransposon protein, putative, unclassified
LOC_Os09g071701/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g01100Os.20092.1.S1_at11/1110+79108..81917Protein kinase domain containing protein, expressed
LOC_Os10g01110Os.46869.1.A1_at11/1110+84584..87611Serine carboxypeptidase family protein, expressed
LOC_Os10g01110Os.46869.2.S1_x_at10/1110+84584..87611Serine carboxypeptidase family protein, expressed
LOC_Os10g01110OsAffx.19331.1.S1_at1/1110+84584..87611Serine carboxypeptidase family protein, expressed
LOC_Os10g01120OsAffx.450.1.S1_at11/1110+89181..90171retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g01134Os.11341.3.S1_at11/1110+94309..100623Serine carboxypeptidase family protein, expressed
LOC_Os10g01134Os.11341.3.S1_x_at11/1110+94309..100623Serine carboxypeptidase family protein, expressed
LOC_Os10g01134Os.11341.1.S1_a_at11/1110+94309..100623Serine carboxypeptidase family protein, expressed
LOC_Os10g01150OsAffx.449.1.A1_at11/1110+101923..102590hypothetical protein
LOC_Os10g01150OsAffx.449.1.A1_x_at11/1110+101923..102590hypothetical protein
LOC_Os10g01164OsAffx.448.1.S1_x_at6/1110+104817..107217retrotransposon protein, putative, unclassified
LOC_Os10g01164OsAffx.448.1.S1_at3/1110+104817..107217retrotransposon protein, putative, unclassified
LOC_Os10g01164OsAffx.8127.1.S1_at1/1110+104817..107217retrotransposon protein, putative, unclassified
LOC_Os10g01180OsAffx.20631.1.S1_x_at2/1110+112811..113521retrotransposon protein, putative, unclassified
LOC_Os10g01180Os.33601.3.S1_x_at1/1110+112811..113521retrotransposon protein, putative, unclassified
LOC_Os10g01200OsAffx.447.1.S1_at11/1110+116265..117206retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g01210NANA10+118261..119952retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.448.1.S1_x_at--612--5791Chr10:106852..106876 (25 bp)
GACGAATCATCTCCAAAGGACGACA
LOC_Os10g01164
OsAffx.448.1.S1_x_at--538--5791Chr10:106870..106894 (25 bp)
GACGACATGGACGTTGACATGGTGT
LOC_Os10g01164
OsAffx.448.1.S1_x_at--927--831Chr10:106876..106900 (25 bp)
ATGGACGTTGACATGGTGTGTATGT
LOC_Os10g01164
OsAffx.448.1.S1_x_at--828--2357Chr11:8748860..8748880 (21 bp)
AAAGCCGAAGTTGCTCAATTTTTAG
LOC_Os11g15440
OsAffx.448.1.S1_x_at--569--591Chr10:107086..107110 (25 bp)
ATGCCGTACTCATTGTTCAAGAAGT
LOC_Os10g01164
OsAffx.448.1.S1_x_at--948--9912Chr10:107175..107199 (25 bp)
TACGGAGGCGAAAGGTATCTTTTTG
LOC_Os10g01164
OsAffx.448.1.S1_x_at--895--6891NONE
GTATCTTTTTGATGGAGCTTACCCT
NONE
OsAffx.448.1.S1_x_at--879--8871NONE
TGATGGAGCTTACCCTTTGGCAAGA
NONE
OsAffx.448.1.S1_x_at--874--8071NONE
GGAGCTTACCCTTTGGCAAGAACTC
NONE
OsAffx.448.1.S1_x_at--122--8238Chr11:3444521..3444542 (22 bp)
GGCAAGAACTCCAAAATGACTCTGA
NONE
OsAffx.448.1.S1_x_at--551--3798Chr11:18356986..18357010 (25 bp)
CTCCAAAATGACTCTGAAAAAGGTG
NONE
Target Sequence 
GACGAATCATCTCCAAAGGACGACATGGACGTTGACATGGTGTGTATGTTGCATATGGAGTTTTGTGCTATGGATAAAGC
CGAAGTTGCTCAATTTTTAGTAGGTCCTAAAGATGCGGTTTTTGAGAAGCCCGATGAATCAAATCGTCATATGAAGCCTC
TTTATCTCAAAGATCATATTGATGGGAAGCCGGTCTCTAGGATGTTGGTGGATGGAGGTGCCGCCGTGAATTTGATGCCG
TACTCATTGTTCAAGAAGTTGGGACATGGAGATGATGAGTTGAAGAAGACTAACATGATTCTCAATGGTTTCAATGGTGA
ACCTACGGAGGCGAAAGGTATCTTTTTGATGGAGCTTACCCTTTGGCAAGAACTCCAAAATGACTCTGAAAAAGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.448.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis