Browse Element(s) Details


OsAffx.8127.1.S1_at

Description gb:NM_196496.1
DB_XREF= gi:37534351
TID=OsAffx.8127.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0032I20.9), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2807011/11retrotransposon protein, putative, unclassified
LOC_Os10g011641/11retrotransposon protein, putative, unclassified
LOC_Os07g286701/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28040Os.21782.2.S1_at11/1110+14219847..14226137acetyltransferase, GNAT family protein, expressed
LOC_Os10g28040Os.21782.1.S1_at11/1110+14219847..14226137acetyltransferase, GNAT family protein, expressed
LOC_Os10g28040Os.21782.1.S1_x_at11/1110+14219847..14226137acetyltransferase, GNAT family protein, expressed
LOC_Os10g28050Os.3121.1.S1_at11/1110+14229567..14230776Chitinase 2, putative, expressed
LOC_Os10g28060Os.46477.1.S1_at4/1110+14231422..14236340Fatty acid elongase, putative, expressed
LOC_Os10g28070OsAffx.8127.1.S1_at11/1110+14248422..14249066retrotransposon protein, putative, unclassified
LOC_Os10g28080Os.28124.1.S1_at11/1110+14260648..14261730Glycosyl hydrolases family 18 protein, expressed
LOC_Os10g28094OsAffx.20348.1.S1_at10/1110+14263515..14265786expressed protein
LOC_Os10g28110OsAffx.30564.2.S1_s_at4/1110+14271706..14271975hypothetical protein
LOC_Os10g28110OsAffx.30564.1.S1_s_at2/1110+14271706..14271975hypothetical protein
LOC_Os10g28120Os.27875.1.S1_at11/1110+14273126..14274259Chitinase 1 precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8127.1.S1_at--282--2912Chr10:14248454..14248478 (25 bp)
AAGGTTGCAATGTCTTTGTGCTCAA
LOC_Os10g28070
OsAffx.8127.1.S1_at--1094--5272Chr10:14248516..14248540 (25 bp)
GAAGGTTCAACGAGTTGCGGCCGCC
LOC_Os10g28070
OsAffx.8127.1.S1_at--1006--7491Chr10:14248553..14248577 (25 bp)
GTGGAGGCCTAAACCAATTGAAGTT
LOC_Os10g28070
OsAffx.8127.1.S1_at--731--3171Chr10:14248567..14248591 (25 bp)
CAATTGAAGTTGAGAAGCCGGTGAT
LOC_Os10g28070
OsAffx.8127.1.S1_at--682--7391Chr10:14248627..14248651 (25 bp)
GTGATTCACCGGTTATTACGACGTC
LOC_Os10g28070
OsAffx.8127.1.S1_at--105--9312Chr10:14248678..14248702 (25 bp)
TCCGCCGCAGCTTGTGGAACAGCCA
LOC_Os10g28070
OsAffx.8127.1.S1_at--1055--10811Chr10:14248689..14248713 (25 bp)
TTGTGGAACAGCCACGAGCTCGGCA
LOC_Os10g28070
OsAffx.8127.1.S1_at--51--8232Chr10:14248710..14248734 (25 bp)
GGCAATGGCATCGTAGCTGCTGCTG
LOC_Os10g28070
OsAffx.8127.1.S1_at--1042--371Chr10:14248977..14249001 (25 bp)
ATCAACATAGTGTTTGCATTGCCTA
LOC_Os10g28070
OsAffx.8127.1.S1_at--106--4951Chr10:14248992..14249016 (25 bp)
GCATTGCCTATAGAATTTCGTGCCA
LOC_Os10g28070
OsAffx.8127.1.S1_at--737--1471Chr10:14249003..14249027 (25 bp)
AGAATTTCGTGCCATGGATGAGGTC
LOC_Os10g28070
Target Sequence 
AAGGTTGCAATGTCTTTGTGCTCAAAAGTTGAAAGAGAAGAAAGCCGAAGAATTGAGAGATAGAAGGTTCAACGAGTTGC
GGCCGCCGCCAAGACAAGAGTGGAGGCCTAAACCAATTGAAGTTGAGAAGCCGGTGATTACTCAAGATGAAGATGAGGAC
AACTTGGATACAAGTGATTCACCGGTTATTACGACGTCGGGTTCTCCTCTCGCCGCGCTTCTCCTCCGCCGCAGCTTGTG
GAACAGCCACGAGCTCGGCAATGGCATCGTAGCTGCTGCTGCTGCAGTGAGGCAGTGTGGTCGTGGACTGTGGGGGGAGA
GCATGGATATCAACATAGTGTTTGCATTGCCTATAGAATTTCGTGCCATGGATGAGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8127.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis