Browse Element(s) Details


OsAffx.30564.2.S1_s_at

Description tigr:9638.m00284
TID=OsAffx.30564.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1104011/11hypothetical protein
LOC_Os10g0377011/11hypothetical protein
LOC_Os03g371708/11hypothetical protein
LOC_Os10g281104/11hypothetical protein
LOC_Os12g154304/11hypothetical protein
LOC_Os01g219091/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11000Os.11947.1.S1_a_at10/1111+6063705..6069244ABC1 family protein, expressed
LOC_Os11g11010OsAffx.30923.1.S1_at10/1111+6070865..6072074hypothetical protein
LOC_Os11g11020Os.39944.1.S1_at11/1111+6083465..6086950expressed protein
LOC_Os11g11030OsAffx.18793.1.S1_at11/1111+6087707..6088042hypothetical protein
LOC_Os11g11040OsAffx.30564.2.S1_s_at11/1111+6089294..6090117hypothetical protein
LOC_Os11g11040OsAffx.30564.1.S1_s_at11/1111+6089294..6090117hypothetical protein
LOC_Os11g11040OsAffx.30564.3.S1_at11/1111+6089294..6090117hypothetical protein
LOC_Os11g11040OsAffx.30564.2.S1_x_at4/1111+6089294..6090117hypothetical protein
LOC_Os11g11040OsAffx.30564.1.S1_at4/1111+6089294..6090117hypothetical protein
LOC_Os11g11050Os.12719.2.S1_at11/1111+6096648..6101955Initiation factor 2 subunit family protein, expressed
LOC_Os11g11050Os.12719.1.S1_at10/1111+6096648..6101955Initiation factor 2 subunit family protein, expressed
LOC_Os11g11050Os.26865.1.S1_at1/1111+6096648..6101955Initiation factor 2 subunit family protein, expressed
LOC_Os11g11060Os.53099.1.S1_at11/1111+6105046..6109195GHMP kinases putative ATP-binding protein, expressed
LOC_Os11g11060Os.38770.1.S1_at3/1111+6105046..6109195GHMP kinases putative ATP-binding protein, expressed
LOC_Os11g11070Os.25108.1.S1_at11/1111+6110262..6119394mRNA capping enzyme, C-terminal domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30564.2.S1_s_at--797--2055Chr11:6089352..6089376 (25 bp)
ACTTCCTTGCGATCCTGTTGAAGGT
LOC_Os11g11040
OsAffx.30564.2.S1_s_at--1026--10675Chr11:6089354..6089378 (25 bp)
TTCCTTGCGATCCTGTTGAAGGTGG
LOC_Os11g11040
OsAffx.30564.2.S1_s_at--406--3635Chr11:6089357..6089381 (25 bp)
CTTGCGATCCTGTTGAAGGTGGTCT
LOC_Os11g11040
OsAffx.30564.2.S1_s_at--158--6157Chr11:6089390..6089414 (25 bp)
GAGGTGGCCGGAATCGATGCCAGTG
LOC_Os11g11040
OsAffx.30564.2.S1_s_at--381--8215Chr11:6089399..6089423 (25 bp)
GGAATCGATGCCAGTGGTGTCGCGA
LOC_Os11g11040
OsAffx.30564.2.S1_s_at--585--7555Chr11:6089979..6090003 (25 bp)
GGTCAAAAGGAGATTTGCTCGGCAT
LOC_Os11g11040
OsAffx.30564.2.S1_s_at--914--3274Chr11:6089982..6090006 (25 bp)
CAAAAGGAGATTTGCTCGGCATGAT
LOC_Os11g11040
OsAffx.30564.2.S1_s_at--939--2914Chr11:6089985..6090009 (25 bp)
AAGGAGATTTGCTCGGCATGATGTG
LOC_Os11g11040
OsAffx.30564.2.S1_s_at--216--215Chr11:6089991..6090015 (25 bp)
ATTTGCTCGGCATGATGTGGGAAGT
LOC_Os11g11040
OsAffx.30564.2.S1_s_at--1119--6234Chr11:6090037..6090061 (25 bp)
GATGGAGACGACTCGTCGGCAACAG
LOC_Os11g11040
OsAffx.30564.2.S1_s_at--591--834Chr11:6090038..6090062 (25 bp)
ATGGAGACGACTCGTCGGCAACAGC
LOC_Os11g11040
Target Sequence 
ACTTCCTTGCGATCCTGTTGAAGGTGGTCTCATCGCCGGAGGTGGCCGGAATCGATGCCAGTGGTGTCGCGAATGGCGGT
GGTCTTCGCAGCAATGGAAAAGACAGCCCGGCGGTGGTGGATAACGTCGGCTTCACGGCGACGGCTCGCTTGGGTGGTGG
AATGCTTAGAGAAGGTGCATGGATGTGGATAAAACGAGATGGGGTCAAAAGGAGATTTGCTCGGCATGATGTGGGAAGTA
TGGAACGGGAAAGATTTGGAGATGGAGACGACTCGTCGGCAACAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30564.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis