Browse Element(s) Details


Os.25108.1.S1_at

Description gb:AK100578.1
DB_XREF= gi:32985787
TID=Os.25108.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.25108 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023105K02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023105K02, full insert sequence.
FL= gb:AK100578.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1107011/11mRNA capping enzyme, C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11020Os.39944.1.S1_at11/1111+6083465..6086950expressed protein
LOC_Os11g11030OsAffx.18793.1.S1_at11/1111+6087707..6088042hypothetical protein
LOC_Os11g11040OsAffx.30564.2.S1_s_at11/1111+6089294..6090117hypothetical protein
LOC_Os11g11040OsAffx.30564.1.S1_s_at11/1111+6089294..6090117hypothetical protein
LOC_Os11g11040OsAffx.30564.3.S1_at11/1111+6089294..6090117hypothetical protein
LOC_Os11g11040OsAffx.30564.2.S1_x_at4/1111+6089294..6090117hypothetical protein
LOC_Os11g11040OsAffx.30564.1.S1_at4/1111+6089294..6090117hypothetical protein
LOC_Os11g11050Os.12719.2.S1_at11/1111+6096648..6101955Initiation factor 2 subunit family protein, expressed
LOC_Os11g11050Os.12719.1.S1_at10/1111+6096648..6101955Initiation factor 2 subunit family protein, expressed
LOC_Os11g11050Os.26865.1.S1_at1/1111+6096648..6101955Initiation factor 2 subunit family protein, expressed
LOC_Os11g11060Os.53099.1.S1_at11/1111+6105046..6109195GHMP kinases putative ATP-binding protein, expressed
LOC_Os11g11060Os.38770.1.S1_at3/1111+6105046..6109195GHMP kinases putative ATP-binding protein, expressed
LOC_Os11g11070Os.25108.1.S1_at11/1111+6110262..6119394mRNA capping enzyme, C-terminal domain containing protein, expressed
LOC_Os11g11080OsAffx.7071.1.S1_at11/1111+6126031..6126300hypothetical protein
LOC_Os11g11090NANA11+6133967..6134269hypothetical protein
LOC_Os11g11100Os.23107.1.S1_at11/1111+6138499..6142082bZIP transcription factor family protein, expressed
LOC_Os11g11110Os.23036.1.A1_at11/1111+6142302..6143884expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006370biological_processmRNA capping
GO:0006397biological_processmRNA processing
GO:0004484molecular_functionmRNA guanylyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25108.1.S1_at--679--1351Chr11:6110725..6110749 (25 bp)
AGAGATCCATGAGATCACGCGCCTC
LOC_Os11g11070
Os.25108.1.S1_at--61--7991Chr11:6110633..6110657 (25 bp)
GGATGCCATCAACATCGTCAGTATT
LOC_Os11g11070
Os.25108.1.S1_at--230--10171Chr11:6110587..6110611 (25 bp)
TATAGTGCTAGAGCGCTGCTACCGT
LOC_Os11g11070
Os.25108.1.S1_at--679--3151Chr11:6110473..6110497 (25 bp)
AATTCTTTGTACCTCTCAAGTCTCA
LOC_Os11g11070
Os.25108.1.S1_at--549--1691Chr11:6110449..6110473 (25 bp)
ACCAATCCCCTGTATAGTCAGTCAG
LOC_Os11g11070
Os.25108.1.S1_at--1001--7111Chr11:6110429..6110453 (25 bp)
GTCAGTCGTCTGCAGAGTAGCCCTT
LOC_Os11g11070
Os.25108.1.S1_at--344--6051Chr11:6110415..6110439 (25 bp)
GAGTAGCCCTTGTAAATCGTGTATT
LOC_Os11g11070
Os.25108.1.S1_at--1105--9411Chr11:6110399..6110423 (25 bp)
TCGTGTATTGTGTTTCTGCATTCTC
LOC_Os11g11070
Os.25108.1.S1_at--307--9491Chr11:6110385..6110409 (25 bp)
TCTGCATTCTCTCCTATGGTTTTAT
LOC_Os11g11070
Os.25108.1.S1_at--168--10251Chr11:6110319..6110343 (25 bp)
TTTGTGTTCAAGTATGCCCAGTAGC
LOC_Os11g11070
Os.25108.1.S1_at--363--9171Chr11:6110305..6110329 (25 bp)
TGCCCAGTAGCATTATTGTCTTCCT
LOC_Os11g11070
Target Sequence 
AGAGATCCATGAGATCACGCGCCTCCCGATGTATGCGGATAGGATAAAGCAGGCTCAGGCAAAGATGGCCCAACATCGAC
GAAGATGAGNATGGATGCCATCAACATCGTCAGTATTTGGTAGTGTTAGTCTTGTTGCTATAGTGCTAGAGCGCTGCTAC
CGTCTATGGCAAGCGGCGGGTTCGCGTAGATTGTGTAAATTAGTAGGGGTTGTTGTAGGATCTTATTNTAATGATGGCTG
GTTAAGCCAACTAATTCTTTGTACCTCTCAAGTCTCACCAATCCCCTGTATAGTCAGTCAGTCGTCTGCAGAGTAGCCCT
TGTAAATCGTGTATTGTGTTTCTGCATTCTCTCCTATGGTTTTATTTTCATGGGTGTAGAATAGCTTTTAACAAGAGGAG
GGAGGGTTTGTGTTCAAGTATGCCCAGTAGCATTATTGTCTTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25108.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis