Browse Element(s) Details


Os.12719.2.S1_at

Description gb:AK100869.1
DB_XREF= gi:32986078
TID=Os.12719.2
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.12719 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023124H10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023124H10, full insert sequence.
FL= gb:AK100869.1 gb:AK060549.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1105011/11Initiation factor 2 subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g11010OsAffx.30923.1.S1_at10/1111+6070865..6072074hypothetical protein
LOC_Os11g11020Os.39944.1.S1_at11/1111+6083465..6086950expressed protein
LOC_Os11g11030OsAffx.18793.1.S1_at11/1111+6087707..6088042hypothetical protein
LOC_Os11g11040OsAffx.30564.2.S1_s_at11/1111+6089294..6090117hypothetical protein
LOC_Os11g11040OsAffx.30564.1.S1_s_at11/1111+6089294..6090117hypothetical protein
LOC_Os11g11040OsAffx.30564.3.S1_at11/1111+6089294..6090117hypothetical protein
LOC_Os11g11040OsAffx.30564.2.S1_x_at4/1111+6089294..6090117hypothetical protein
LOC_Os11g11040OsAffx.30564.1.S1_at4/1111+6089294..6090117hypothetical protein
LOC_Os11g11050Os.12719.2.S1_at11/1111+6096648..6101955Initiation factor 2 subunit family protein, expressed
LOC_Os11g11050Os.12719.1.S1_at10/1111+6096648..6101955Initiation factor 2 subunit family protein, expressed
LOC_Os11g11050Os.26865.1.S1_at1/1111+6096648..6101955Initiation factor 2 subunit family protein, expressed
LOC_Os11g11060Os.53099.1.S1_at11/1111+6105046..6109195GHMP kinases putative ATP-binding protein, expressed
LOC_Os11g11060Os.38770.1.S1_at3/1111+6105046..6109195GHMP kinases putative ATP-binding protein, expressed
LOC_Os11g11070Os.25108.1.S1_at11/1111+6110262..6119394mRNA capping enzyme, C-terminal domain containing protein, expressed
LOC_Os11g11080OsAffx.7071.1.S1_at11/1111+6126031..6126300hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0005851cellular_componenteukaryotic translation initiation factor 2B complex
GO:0003743molecular_functiontranslation initiation factor activity
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12719.2.S1_at--482--9891Chr11:6101158..6101182 (25 bp)
TACTATATTGAAAAGGCCCATGTTG
LOC_Os11g11050
Os.12719.2.S1_at--1081--10711Chr11:6101199..6101223 (25 bp)
TTGCTCCTAGTGAAGCAGAAAATTA
LOC_Os11g11050
Os.12719.2.S1_at--726--5511Chr11:6101216..6101240 (25 bp)
GAAAATTAGGTCTTTTTGCGCCACA
LOC_Os11g11050
Os.12719.2.S1_at--5--10291Chr11:6101230..6101254 (25 bp)
TTTGCGCCACAAAATTTGATGTACT
LOC_Os11g11050
Os.12719.2.S1_at--174--9911Chr11:6101251..6101275 (25 bp)
TACTGTGAAGATATATGACCATGTG
LOC_Os11g11050
Os.12719.2.S1_at--413--10131Chr11:6101264..6101288 (25 bp)
TATGACCATGTGTGTCTCGTGAGCC
LOC_Os11g11050
Os.12719.2.S1_at--621--7471Chr11:6101273..6101297 (25 bp)
GTGTGTCTCGTGAGCCGGACAAGAT
LOC_Os11g11050
Os.12719.2.S1_at--378--2811Chr11:6101293..6101317 (25 bp)
AAGATTCTTGAGAAATCCACGTCTC
LOC_Os11g11050
Os.12719.2.S1_at--524--10551Chr11:6101338..6101362 (25 bp)
TTCATATTCCGGTTGGAACCAAAAT
LOC_Os11g11050
Os.12719.2.S1_at--239--3151Chr11:6101360..6101384 (25 bp)
AATTAAGTTCTGATGCGCTCGCTGA
LOC_Os11g11050
Os.12719.2.S1_at--783--591Chr11:6101372..6101396 (25 bp)
ATGCGCTCGCTGAACTTTCTTAAAA
LOC_Os11g11050
Target Sequence 
TACTATATTGAAAAGGCCCATGTTGTACTGTCAAAAAAAAAATTGCTCCTAGTGAAGCAGAAAATTAGGTCTTTTTGCGC
CACAAAATTTGATGTACTGTGAAGATATATGACCATGTGTGTCTCGTGAGCCGGACAAGATTCTTGAGAAATCCACGTCT
CCATCAAGAACTCTTTTTTTTTTCATATTCCGGTTGGAACCAAAATTAAGTTCTGATGCGCTCGCTGAACTTTCTTAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12719.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis