Browse Element(s) Details


Os.26865.1.S1_at

Description gb:CB622754
DB_XREF= gi:29617742
DB_XREF=OSIIEa09O12.r
CLONE=OSIIEa09O12
TID=Os.26865.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.26865 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_186948.1 (A.thaliana) putative N-acetlytransferase (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4670010/11GCN5-related N-acetyltransferase, putative, expressed
LOC_Os11g110501/11Initiation factor 2 subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46680Os.31907.1.S1_x_at11/112+28481686..28492751P-glycoprotein, putative, expressed
LOC_Os02g46680OsAffx.25903.3.S1_at1/112+28481686..28492751P-glycoprotein, putative, expressed
LOC_Os02g46690OsAffx.12526.1.S1_at11/112+28506520..28508121F-box domain containing protein
LOC_Os02g46700Os.26865.1.S1_at10/112+28511390..28515488GCN5-related N-acetyltransferase, putative, expressed
LOC_Os02g46710Os.10375.1.S1_at2/112+28517389..28522754hypothetical protein
LOC_Os02g46720Os.52424.1.S1_x_at11/112+28527032..28531089IBR domain containing protein, expressed
LOC_Os02g46730OsAffx.24757.1.S1_at11/112+28533360..28537155hypothetical protein
LOC_Os02g46730Os.52424.1.S1_x_at1/112+28533360..28537155hypothetical protein
LOC_Os02g46740Os.54845.1.S1_at11/112+28539305..28542468RWD domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0008152biological_processmetabolism
GO:0005851cellular_componenteukaryotic translation initiation factor 2B complex
GO:0003743molecular_functiontranslation initiation factor activity
GO:0005525molecular_functionGTP binding
GO:0008080molecular_functionN-acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26865.1.S1_at--1079--7711Chr02:28514402..28514426 (25 bp)
GGGTGTCTATTTGCATGTCATCTCA
LOC_Os02g46700
Os.26865.1.S1_at--639--8731Chr02:28514387..28514411 (25 bp)
TGTCATCTCATATAACCAACCTGCT
LOC_Os02g46700
Os.26865.1.S1_at--238--1711Chr02:28514373..28514397 (25 bp)
ACCAACCTGCTATCAGCTTTTACAA
LOC_Os02g46700
Os.26865.1.S1_at--435--10811Chr02:28514331..28514355 (25 bp)
TTGTCAGACGACTTCCACATTTCTA
LOC_Os02g46700
Os.26865.1.S1_at--281--10271Chr02:28511728..28511752 (25 bp)
TTTGTTGTTGACTTCAGGGCTTTCC
LOC_Os02g46700
Os.26865.1.S1_at--144--4891Chr02:28511710..28511734 (25 bp)
GCTTTCCTGAAGATGGTGGTTGCCA
LOC_Os02g46700
Os.26865.1.S1_at--135--1051Chr02:28511644..28511668 (25 bp)
AGGTGCAAGGAATCGACCACTCTCT
LOC_Os02g46700
Os.26865.1.S1_at--765--5851Chr02:28511630..28511654 (25 bp)
GACCACTCTCTTGGTATCTCAGAAT
LOC_Os02g46700
Os.26865.1.S1_at--1110--7111Chr02:28511566..28511590 (25 bp)
GTCTAACTTTAGGTGCAGCTGGGAT
LOC_Os02g46700
Os.26865.1.S1_at--595--5071Chr11:6098730..6098774 (24 bp)
GCAGCTGGGATTTTGTTTTCTCTTG
LOC_Os11g11050
Os.26865.1.S1_at--146--6971Chr02:28511495..28511519 (25 bp)
GTAGCTTGCTACGTTGTTGTATCTG
LOC_Os02g46700
Target Sequence 
GGGTGTCTATTTGCATGTCATCTCATATAACCAACCTGCTATCAGCTTTTACAATAAGATGCTATTTAAGCTTGTCAGAC
GACTTCCACATTTCTATTACATAAGAGGGCAGCATTATGATTCATACTTGTTTGTGTACTATGTCAATGGGGGCCGTTCG
CCTTGCTCACCACTGGAGGTCATAACTTCATTTGTTGTTGACTTCAGGGCTTTCCTGAAGATGGTGGTTGCCAGGTTCTG
GAACAAAGAGGAGAGAAGTACACCCAGATGGTCCAGGTGCAAGGAATCGACCACTCTCTTGGTATCTCAGAATAACAAGA
GGATCATTGGTGGTGATGATACGAGATGTCATGTCTAACTTTAGGTGCAGCTGGGATTTTGTTTTCTCTTGTTTTTGTGG
AAACCTCAGTTTGTTTAAAAACCGTAGCTTGCTACGTTGTTGTATCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26865.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis