Browse Element(s) Details


OsAffx.24757.1.S1_at

Description tigr:9630.m04543
TID=OsAffx.24757.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 01485.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4673011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46700Os.26865.1.S1_at10/112+28511390..28515488GCN5-related N-acetyltransferase, putative, expressed
LOC_Os02g46710Os.10375.1.S1_at2/112+28517389..28522754hypothetical protein
LOC_Os02g46720Os.52424.1.S1_x_at11/112+28527032..28531089IBR domain containing protein, expressed
LOC_Os02g46730OsAffx.24757.1.S1_at11/112+28533360..28537155hypothetical protein
LOC_Os02g46730Os.52424.1.S1_x_at1/112+28533360..28537155hypothetical protein
LOC_Os02g46740Os.54845.1.S1_at11/112+28539305..28542468RWD domain containing protein, expressed
LOC_Os02g46750Os.27694.1.S1_at11/112+28542482..28545958expressed protein
LOC_Os02g46760OsAffx.12527.1.S1_at11/112+28546870..28547892Protein kinase domain containing protein
LOC_Os02g46770OsAffx.12528.1.S1_x_at11/112+28549925..28550365Leucine Rich Repeat family protein
LOC_Os02g46770OsAffx.12528.1.S1_at11/112+28549925..28550365Leucine Rich Repeat family protein
LOC_Os02g46780Os.47854.1.S1_at11/112+28552395..28554151Myb-related protein Zm1, putative, expressed
LOC_Os02g46790OsAffx.12529.1.S1_at11/112+28561161..28561511hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24757.1.S1_at--257--1991Chr02:28535892..28535952 (25 bp)
ACTGCCCCAGGGTTGCTTTAAGCTT
LOC_Os02g46730
OsAffx.24757.1.S1_at--1074--10491Chr02:28535945..28535969 (25 bp)
TTAAGCTTACAGTCCTTCTGCTACA
LOC_Os02g46730
OsAffx.24757.1.S1_at--925--4931Chr02:28536105..28536129 (25 bp)
GCATTCCATGCCAGCGGAACAATTG
LOC_Os02g46730
OsAffx.24757.1.S1_at--24--671Chr02:28536160..28536184 (25 bp)
ATGAATATCCAGGAAGCGCTTCGTA
LOC_Os02g46730
OsAffx.24757.1.S1_at--937--5411Chr02:28536172..28536196 (25 bp)
GAAGCGCTTCGTAGTTCTAAGCAAT
LOC_Os02g46730
OsAffx.24757.1.S1_at--1032--6471Chr02:28536266..28536290 (25 bp)
GATACTTTTGCTATCGTTGCAACCA
LOC_Os02g46730
OsAffx.24757.1.S1_at--997--5591Chr02:28536406..28536430 (25 bp)
GAAATTGTGTGCTGTTTGGGACCCA
LOC_Os02g46730
OsAffx.24757.1.S1_at--1018--5091Chr02:28536434..28536458 (25 bp)
GCACTACCAAATTCGAAACCCACAG
LOC_Os02g46730
OsAffx.24757.1.S1_at--361--1631Chr02:28536463..28536487 (25 bp)
AGCGTGATGAAAATCCTGGTGACCA
LOC_Os02g46730
OsAffx.24757.1.S1_at--826--8611Chr02:28536479..28536503 (25 bp)
TGGTGACCACGCTGAACTCTTAGAA
LOC_Os02g46730
OsAffx.24757.1.S1_at--813--5491Chr02:28536501..28536525 (25 bp)
GAACAACGGGTGCAGCTCACTTATC
LOC_Os02g46730
Target Sequence 
ACTGCCCCAGGGTTGCTTTAAGCTTACAGTCCTTCTGCTACACCCAACTATGCTATTTTTTTCACAAGAAAAAGGATGAA
AATGACATCTATTTGATGGAACGTCAGAAGTTGCATTCCATGCCAGCGGAACAATTGTTGAAAGAACGGAGGGAATTAGA
AGAGTTGATGAATATCCAGGAAGCGCTTCGTAGTTCTAAGCAATGCCCTCATTGTAAGATGGCTATCTCAAAAATTGAAG
GTTGCAACAAGATGATTTGCGTGAACTGTGGGGGATACTTTTGCTATCGTTGCAACCAGGCAATTAAAGGATACGAGCAT
TTCTGGGGTGGAAATTGTGTGCTGTTTGGGACCCACGCGCACTACCAAATTCGAAACCCACAGCAGCAGCGTGATGAAAA
TCCTGGTGACCACGCTGAACTCTTAGAACAACGGGTGCAGCTCACTTATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24757.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis