Browse Element(s) Details


OsAffx.12528.1.S1_at

Description tigr:9630.m04547
TID=OsAffx.12528.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4677011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46720Os.52424.1.S1_x_at11/112+28527032..28531089IBR domain containing protein, expressed
LOC_Os02g46730OsAffx.24757.1.S1_at11/112+28533360..28537155hypothetical protein
LOC_Os02g46730Os.52424.1.S1_x_at1/112+28533360..28537155hypothetical protein
LOC_Os02g46740Os.54845.1.S1_at11/112+28539305..28542468RWD domain containing protein, expressed
LOC_Os02g46750Os.27694.1.S1_at11/112+28542482..28545958expressed protein
LOC_Os02g46760OsAffx.12527.1.S1_at11/112+28546870..28547892Protein kinase domain containing protein
LOC_Os02g46770OsAffx.12528.1.S1_x_at11/112+28549925..28550365Leucine Rich Repeat family protein
LOC_Os02g46770OsAffx.12528.1.S1_at11/112+28549925..28550365Leucine Rich Repeat family protein
LOC_Os02g46780Os.47854.1.S1_at11/112+28552395..28554151Myb-related protein Zm1, putative, expressed
LOC_Os02g46790OsAffx.12529.1.S1_at11/112+28561161..28561511hypothetical protein
LOC_Os02g46800NANA2+28567038..28567301hypothetical protein
LOC_Os02g46810NANA2+28568142..28568723amino acid transporter, putative, expressed
LOC_Os02g46820OsAffx.2981.1.S1_at11/112+28570301..28570888hypothetical protein
LOC_Os02g46830Os.8670.1.S1_at2/112+28572644..28573044hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12528.1.S1_at--2--251Chr02:28549982..28550006 (25 bp)
ATATACTTCGATAAGGACACCGACG
LOC_Os02g46770
OsAffx.12528.1.S1_at--356--331Chr02:28549984..28550008 (25 bp)
ATACTTCGATAAGGACACCGACGGG
LOC_Os02g46770
OsAffx.12528.1.S1_at--721--7991Chr02:28550008..28550032 (25 bp)
GGAGACCCTAGCCTTTCGTGTCCGC
LOC_Os02g46770
OsAffx.12528.1.S1_at--835--8291Chr02:28550037..28550061 (25 bp)
GGCTCCACGACTGCCGCGTCGAGCA
LOC_Os02g46770
OsAffx.12528.1.S1_at--821--4451Chr02:28550091..28550115 (25 bp)
GCCTCAACAGCATCTTGCCGGCGAA
LOC_Os02g46770
OsAffx.12528.1.S1_at--144--9691Chr02:28550094..28550118 (25 bp)
TCAACAGCATCTTGCCGGCGAAGCT
LOC_Os02g46770
OsAffx.12528.1.S1_at--10--3011Chr02:28550159..28550183 (25 bp)
AATGACATCTCTAGCGTGCTCCCCA
LOC_Os02g46770
OsAffx.12528.1.S1_at--216--9511Chr02:28550166..28550190 (25 bp)
TCTCTAGCGTGCTCCCCAATGGCGG
LOC_Os02g46770
OsAffx.12528.1.S1_at--929--2951Chr02:28550183..28550207 (25 bp)
AATGGCGGCTCCGTCTCGTACTTGC
LOC_Os02g46770
OsAffx.12528.1.S1_at--1162--9471Chr02:28550196..28550220 (25 bp)
TCTCGTACTTGCTCAGCCTCCAGGA
LOC_Os02g46770
OsAffx.12528.1.S1_at--514--9391Chr02:28550198..28550222 (25 bp)
TCGTACTTGCTCAGCCTCCAGGAGC
LOC_Os02g46770
Target Sequence 
ATATACTTCGATAAGGACACCGACGGGGAGACCCTAGCCTTTCGTGTCCGCCCCTGGCTCCACGACTGCCGCGTCGAGCA
CCTCCGCCACCTCGACCTCTCTAGGAACAGCCTCAACAGCATCTTGCCGGCGAAGCTGCTCAACGCGACCGAGCTCCGGG
TGCTCTCACTTGCCGACAATGACATCTCTAGCGTGCTCCCCAATGGCGGCTCCGTCTCGTACTTGCTCAGCCTCCAGGAG
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12528.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis