Browse Element(s) Details


OsAffx.2981.1.S1_at

Description tigr:9630.m04552
TID=OsAffx.2981.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4682011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46750Os.27694.1.S1_at11/112+28542482..28545958expressed protein
LOC_Os02g46760OsAffx.12527.1.S1_at11/112+28546870..28547892Protein kinase domain containing protein
LOC_Os02g46770OsAffx.12528.1.S1_x_at11/112+28549925..28550365Leucine Rich Repeat family protein
LOC_Os02g46770OsAffx.12528.1.S1_at11/112+28549925..28550365Leucine Rich Repeat family protein
LOC_Os02g46780Os.47854.1.S1_at11/112+28552395..28554151Myb-related protein Zm1, putative, expressed
LOC_Os02g46790OsAffx.12529.1.S1_at11/112+28561161..28561511hypothetical protein
LOC_Os02g46800NANA2+28567038..28567301hypothetical protein
LOC_Os02g46810NANA2+28568142..28568723amino acid transporter, putative, expressed
LOC_Os02g46820OsAffx.2981.1.S1_at11/112+28570301..28570888hypothetical protein
LOC_Os02g46830Os.8670.1.S1_at2/112+28572644..28573044hypothetical protein
LOC_Os02g46850Os.18232.1.S1_at10/112+28575696..28578550Oligopeptide transporter 4, putative, expressed
LOC_Os02g46860Os.51477.1.S1_at11/112+28581077..28582096Oligopeptide transporter 4, putative, expressed
LOC_Os02g46870NANA2+28584220..28587025transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g46880OsAffx.22848.3.S1_x_at3/112+28589936..28595836retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g46880OsAffx.22848.4.S1_at2/112+28589936..28595836retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g46880OsAffx.22848.4.S1_x_at2/112+28589936..28595836retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2981.1.S1_at--806--1051Chr02:28570350..28570374 (25 bp)
AGGTGGTCCGTCTGCTGGTCCGACA
LOC_Os02g46820
OsAffx.2981.1.S1_at--14--9131Chr02:28570362..28570386 (25 bp)
TGCTGGTCCGACACCATGTCGACAT
LOC_Os02g46820
OsAffx.2981.1.S1_at--12--2111Chr02:28570383..28570407 (25 bp)
ACATCGCCTCGCATTGTCATTCTTG
LOC_Os02g46820
OsAffx.2981.1.S1_at--855--7131Chr02:28570398..28570422 (25 bp)
GTCATTCTTGTCAATCCCACAGGCT
LOC_Os02g46820
OsAffx.2981.1.S1_at--474--10791Chr02:28570405..28570429 (25 bp)
TTGTCAATCCCACAGGCTCGCCGGT
LOC_Os02g46820
OsAffx.2981.1.S1_at--536--3971Chr02:28570426..28570450 (25 bp)
CGGTCATGCCTGTCGATCGGAGGCA
LOC_Os02g46820
OsAffx.2981.1.S1_at--111--4251Chr02:28570434..28570458 (25 bp)
CCTGTCGATCGGAGGCAAGGATTGA
LOC_Os02g46820
OsAffx.2981.1.S1_at--972--8211Chr02:28570447..28570471 (25 bp)
GGCAAGGATTGAGGACGACACTAAT
LOC_Os02g46820
OsAffx.2981.1.S1_at--560--5631Chr02:28570463..28570487 (25 bp)
GACACTAATGGGATGCCGTCGCAGA
LOC_Os02g46820
OsAffx.2981.1.S1_at--819--6351Chr02:28570827..28570851 (25 bp)
GATGCCACATCAGCGTAACCATAGA
LOC_Os02g46820
OsAffx.2981.1.S1_at--725--2091Chr02:28570833..28570857 (25 bp)
ACATCAGCGTAACCATAGAACCATA
LOC_Os02g46820
Target Sequence 
AGGTGGTCCGTCTGCTGGTCCGACACCATGTCGACATCGCCTCGCATTGTCATTCTTGTCAATCCCACAGGCTCGCCGGT
CATGCCTGTCGATCGGAGGCAAGGATTGAGGACGACACTAATGGGATGCCGTCGCAGAAAGAGAGGGGGGCGCCGATGAC
GGAGGGAGTGGGACTGTGGGAGGCCGGATGCCACATCAGCGTAACCATAGAACCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2981.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis