Browse Element(s) Details


Os.47854.1.S1_at

Description gb:AK111720.1
DB_XREF= gi:37988383
TID=Os.47854.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.47854 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-017-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023030I19, full insert sequence.
FL= gb:AK111720.1 gb:AK111933.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4678011/11Myb-related protein Zm1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46720Os.52424.1.S1_x_at11/112+28527032..28531089IBR domain containing protein, expressed
LOC_Os02g46730OsAffx.24757.1.S1_at11/112+28533360..28537155hypothetical protein
LOC_Os02g46730Os.52424.1.S1_x_at1/112+28533360..28537155hypothetical protein
LOC_Os02g46740Os.54845.1.S1_at11/112+28539305..28542468RWD domain containing protein, expressed
LOC_Os02g46750Os.27694.1.S1_at11/112+28542482..28545958expressed protein
LOC_Os02g46760OsAffx.12527.1.S1_at11/112+28546870..28547892Protein kinase domain containing protein
LOC_Os02g46770OsAffx.12528.1.S1_x_at11/112+28549925..28550365Leucine Rich Repeat family protein
LOC_Os02g46770OsAffx.12528.1.S1_at11/112+28549925..28550365Leucine Rich Repeat family protein
LOC_Os02g46780Os.47854.1.S1_at11/112+28552395..28554151Myb-related protein Zm1, putative, expressed
LOC_Os02g46790OsAffx.12529.1.S1_at11/112+28561161..28561511hypothetical protein
LOC_Os02g46800NANA2+28567038..28567301hypothetical protein
LOC_Os02g46810NANA2+28568142..28568723amino acid transporter, putative, expressed
LOC_Os02g46820OsAffx.2981.1.S1_at11/112+28570301..28570888hypothetical protein
LOC_Os02g46830Os.8670.1.S1_at2/112+28572644..28573044hypothetical protein
LOC_Os02g46850Os.18232.1.S1_at10/112+28575696..28578550Oligopeptide transporter 4, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47854.1.S1_at--204--6731Chr02:28552854..28552878 (25 bp)
GTTCTCTCATGATTCCACCGATGGA
LOC_Os02g46780
Os.47854.1.S1_at--983--6571Chr02:28552844..28552868 (25 bp)
GATTCCACCGATGGATCACGTCCGT
LOC_Os02g46780
Os.47854.1.S1_at--1079--3331Chr02:28552828..28552852 (25 bp)
CACGTCCGTCCGATTTGGAGCAGAA
LOC_Os02g46780
Os.47854.1.S1_at--13--6831Chr02:28552797..28552821 (25 bp)
GTTTAACCAATAGTGATCTGATCCA
LOC_Os02g46780
Os.47854.1.S1_at--797--371Chr02:28552755..28552779 (25 bp)
ATCAAGATAGATCGGCCACTGCACT
LOC_Os02g46780
Os.47854.1.S1_at--209--4371Chr02:28552740..28552764 (25 bp)
CCACTGCACTATCATCTACAGCAAA
LOC_Os02g46780
Os.47854.1.S1_at--122--10471Chr02:28552695..28552719 (25 bp)
TTACCCGCTATATTTGACGCGACGA
LOC_Os02g46780
Os.47854.1.S1_at--65--2891Chr02:28552598..28552622 (25 bp)
AAGGGTCAAGCCGTCAAACACAAGG
LOC_Os02g46780
Os.47854.1.S1_at--342--2871Chr02:28552548..28552572 (25 bp)
AAGTGTTTACTACCTTCTAGTGCTC
LOC_Os02g46780
Os.47854.1.S1_at--221--10791Chr02:28552487..28552511 (25 bp)
TTGATTGGGCATGGGACGGCACTCC
LOC_Os02g46780
Os.47854.1.S1_at--116--5751Chr02:28552473..28552497 (25 bp)
GACGGCACTCCATTGAAGAGCCAAT
LOC_Os02g46780
Target Sequence 
GTTCTCTCATGATTCCACCGATGGATCACGTCCGTCCGATTTGGAGCAGAAGGCGGAGTTTAACCAATAGTGATCTGATC
CAACGGACNAGATAGATCGATCAAGATAGATCGGCCACTGCACTATCATCTACAGCAAATACGAATCGATCAACACAANT
TACCCGCTATATTTGACGCGACGACGAAGAGTGATTAATTTGTTTGGTGTTGCAGTAAATGGCGAAGGTTTAGATTAACT
AGGATGCACATACAAAAAGGGTCAAGCCGTCAAACACAAGGCGAAAGTGTAGTAGAGACACAACACAAGTGTTTACTACC
TTCTAGTGCTCTTTTTTTAACATTTTTAACCCAAGAAAATGTAGTTTTTGATTGGGCATGGGACGGCACTCCATTGAAGA
GCCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47854.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis