Browse Element(s) Details


Os.8670.1.S1_at

Description gb:AK062960.1
DB_XREF= gi:32972978
TID=Os.8670.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8670 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-109-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-109-D05, full insert sequence.
FL= gb:AK062960.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g468302/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46760OsAffx.12527.1.S1_at11/112+28546870..28547892Protein kinase domain containing protein
LOC_Os02g46770OsAffx.12528.1.S1_x_at11/112+28549925..28550365Leucine Rich Repeat family protein
LOC_Os02g46770OsAffx.12528.1.S1_at11/112+28549925..28550365Leucine Rich Repeat family protein
LOC_Os02g46780Os.47854.1.S1_at11/112+28552395..28554151Myb-related protein Zm1, putative, expressed
LOC_Os02g46790OsAffx.12529.1.S1_at11/112+28561161..28561511hypothetical protein
LOC_Os02g46800NANA2+28567038..28567301hypothetical protein
LOC_Os02g46810NANA2+28568142..28568723amino acid transporter, putative, expressed
LOC_Os02g46820OsAffx.2981.1.S1_at11/112+28570301..28570888hypothetical protein
LOC_Os02g46830Os.8670.1.S1_at2/112+28572644..28573044hypothetical protein
LOC_Os02g46850Os.18232.1.S1_at10/112+28575696..28578550Oligopeptide transporter 4, putative, expressed
LOC_Os02g46860Os.51477.1.S1_at11/112+28581077..28582096Oligopeptide transporter 4, putative, expressed
LOC_Os02g46870NANA2+28584220..28587025transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g46880OsAffx.22848.3.S1_x_at3/112+28589936..28595836retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g46880OsAffx.22848.4.S1_at2/112+28589936..28595836retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g46880OsAffx.22848.4.S1_x_at2/112+28589936..28595836retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8670.1.S1_at--25--2451Chr02:28572641..28572665 (25 bp)
AAAATGCATCGGCAGCTTAGCCTCT
NONE
Os.8670.1.S1_at--1052--7631Chr02:28572783..28572807 (25 bp)
GGGAGGAGAGGACCATCCACCTCAT
LOC_Os02g46830
Os.8670.1.S1_at--927--9251Chr02:28572863..28573000 (25 bp)
TCCTCCGCTGATATGTCGAGCTTCA
LOC_Os02g46830
Os.8670.1.S1_at--572--6211Chr02:28573026..28573050 (25 bp)
GAGGCTGAGGATGCTGTAAACTTCT
NONE
Os.8670.1.S1_at--1070--3851Chr02:28573084..28573108 (25 bp)
CTGATCCGTTTTGCTTTGCGAATTT
NONE
Os.8670.1.S1_at--313--6551Chr02:28573115..28573139 (25 bp)
GATTTTGTGCTGTATTTGCTCTCAA
NONE
Os.8670.1.S1_at--989--10711Chr02:28573130..28573154 (25 bp)
TTGCTCTCAAATATGCGACTGCGTA
NONE
Os.8670.1.S1_at--994--9131Chr02:28573149..28573173 (25 bp)
TGCGTACGCAGCTACTTAAGCAGCA
NONE
Os.8670.1.S1_at--79--5151Chr02:28573194..28573218 (25 bp)
GCAACTTTATGCAATCTTTTGGTGA
NONE
Os.8670.1.S1_at--95--3671Chr02:28573229..28573253 (25 bp)
CTTAATCGTTTGAATTGCCTCTGAA
NONE
Os.8670.1.S1_at--1133--10171Chr02:28573284..28573308 (25 bp)
TATATGCGGTTATATGCTCCTACCA
NONE
Target Sequence 
AAAATGCATCGGCAGCTTAGCCTCTCACCGGGGCCGAAGCAGCAGCAGCACGACGACGGCGGCAACATCGGCATCGGCAG
CGACGCGGCGGAGGTGATGGCGGTGCCGGAGGAGTCGTCGGCGGCCAAGGGCCGGTCGGTCAGGGAGGAGAGGACCATCC
ACCTCATCCCGCTGCTCANCTTCCTCTGCTTCCTCCTCCTCTTNCCTCTTCTCCCACGACCCTTCCTCCGCTGATATGTC
GAGCTTCAGGGACGGAGGGAACGGTGGCAACAGGAGGCTGAGGATGCTGTAAACTTCTAGCATCAATTATTGTCAGCTAT
GTTTTTTTTTTCTGATCCGTTTTGCTTTGCGAATTTGGATCAGATTTTGTGCTGTATTTGCTCTCAAATATGCGACTGCG
TACGCAGCTACTTAAGCAGCAGTAATTAGTATTTGTAATCTGCAACTTTATGCAATCTTTTGGTGAGTTCTTAAATCTTA
ATCGTTTGAATTGCCTCTGAAGAATAAGTCGGGGACATGGCATAAGGAGAATATATGCGGTTATATGCTCCTACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8670.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis