Browse Element(s) Details


OsAffx.12527.1.S1_at

Description tigr:9630.m04546
TID=OsAffx.12527.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4676011/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46710Os.10375.1.S1_at2/112+28517389..28522754hypothetical protein
LOC_Os02g46720Os.52424.1.S1_x_at11/112+28527032..28531089IBR domain containing protein, expressed
LOC_Os02g46730OsAffx.24757.1.S1_at11/112+28533360..28537155hypothetical protein
LOC_Os02g46730Os.52424.1.S1_x_at1/112+28533360..28537155hypothetical protein
LOC_Os02g46740Os.54845.1.S1_at11/112+28539305..28542468RWD domain containing protein, expressed
LOC_Os02g46750Os.27694.1.S1_at11/112+28542482..28545958expressed protein
LOC_Os02g46760OsAffx.12527.1.S1_at11/112+28546870..28547892Protein kinase domain containing protein
LOC_Os02g46770OsAffx.12528.1.S1_x_at11/112+28549925..28550365Leucine Rich Repeat family protein
LOC_Os02g46770OsAffx.12528.1.S1_at11/112+28549925..28550365Leucine Rich Repeat family protein
LOC_Os02g46780Os.47854.1.S1_at11/112+28552395..28554151Myb-related protein Zm1, putative, expressed
LOC_Os02g46790OsAffx.12529.1.S1_at11/112+28561161..28561511hypothetical protein
LOC_Os02g46800NANA2+28567038..28567301hypothetical protein
LOC_Os02g46810NANA2+28568142..28568723amino acid transporter, putative, expressed
LOC_Os02g46820OsAffx.2981.1.S1_at11/112+28570301..28570888hypothetical protein
LOC_Os02g46830Os.8670.1.S1_at2/112+28572644..28573044hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000165biological_processMAPKKK cascade
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004708molecular_functionMAP kinase kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12527.1.S1_at--150--7311Chr02:28547319..28547343 (25 bp)
GTGCGTGCTCCGTGGCCTGAGCCAC
LOC_Os02g46760
OsAffx.12527.1.S1_at--88--9271Chr02:28547554..28547578 (25 bp)
TCCGGCGACGTGTGGTCCCTGGGAG
LOC_Os02g46760
OsAffx.12527.1.S1_at--748--9311Chr02:28547569..28547593 (25 bp)
TCCCTGGGAGTCGTGCTGCTCGAAT
LOC_Os02g46760
OsAffx.12527.1.S1_at--621--7651Chr02:28547574..28547598 (25 bp)
GGGAGTCGTGCTGCTCGAATGCCAC
LOC_Os02g46760
OsAffx.12527.1.S1_at--1089--9091Chr02:28547585..28547609 (25 bp)
TGCTCGAATGCCACGCCGGCAGGTT
LOC_Os02g46760
OsAffx.12527.1.S1_at--721--8511Chr02:28547778..28547802 (25 bp)
TGGACACCCCTTCGTCGCGGGAAAG
LOC_Os02g46760
OsAffx.12527.1.S1_at--905--10611Chr02:28547788..28547812 (25 bp)
TTCGTCGCGGGAAAGCCGTCTCGTT
LOC_Os02g46760
OsAffx.12527.1.S1_at--1005--2351Chr02:28547799..28547823 (25 bp)
AAAGCCGTCTCGTTGCGAGCGCCAA
LOC_Os02g46760
OsAffx.12527.1.S1_at--331--7171Chr02:28547805..28547829 (25 bp)
GTCTCGTTGCGAGCGCCAAAACGAG
LOC_Os02g46760
OsAffx.12527.1.S1_at--19--6131Chr02:28547827..28547851 (25 bp)
GAGTGGCGCACCACCTTCCAGGACA
LOC_Os02g46760
OsAffx.12527.1.S1_at--352--4971Chr02:28547834..28547858 (25 bp)
GCACCACCTTCCAGGACAAAACTGG
LOC_Os02g46760
Target Sequence 
GTGCGTGCTCCGTGGCCTGAGCCACCTGCACCGCCTCGGCGTCGCGCACGGCGACGTGAAGCCGTCCAACCTCCTCGTCG
GCCACCGCGGCGAGATCAAGATCGCCGACTTCGGCGCCAGCCGCGTCGTCACGGGCCGCGACGAAGCCCACCACCAGTCA
CCCGGCACGTGGGCGTACATGAGCCCCGAGAAGCTCCACCCGGAAGGGTTCGGCGGCGGTGGCGGCGCCGACTTCTCCGG
CGACGTGTGGTCCCTGGGAGTCGTGCTGCTCGAATGCCACGCCGGCAGGTTCCCGCTCGTGGCCGCCGGGGAGAGGCCGG
ACTGGCCGGCGCTCGTCCTGGCCGTGTGCTTCGCCGCCGCGCCGGAGGTGCCCGTCGCGGCGTCGCCGGAGTTCGGCGGC
TTCGTGCGGCGGTGCCTGGAGAAGGACTGGAGGAGGAGGGCCACCGTGGAGGAGCTTCTTGGACACCCCTTCGTCGCGGG
AAAGCCGTCTCGTTGCGAGCGCCAAAACGAGTGGCGCACCACCTTCCAGGACAAAACTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12527.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis