Browse Element(s) Details


Os.10375.1.S1_at

Description gb:AK069517.1
DB_XREF= gi:32979541
TID=Os.10375.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.10375 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023025F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023025F06, full insert sequence.
FL= gb:AK069517.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g467102/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46680Os.31907.1.S1_x_at11/112+28481686..28492751P-glycoprotein, putative, expressed
LOC_Os02g46680OsAffx.25903.3.S1_at1/112+28481686..28492751P-glycoprotein, putative, expressed
LOC_Os02g46690OsAffx.12526.1.S1_at11/112+28506520..28508121F-box domain containing protein
LOC_Os02g46700Os.26865.1.S1_at10/112+28511390..28515488GCN5-related N-acetyltransferase, putative, expressed
LOC_Os02g46710Os.10375.1.S1_at2/112+28517389..28522754hypothetical protein
LOC_Os02g46720Os.52424.1.S1_x_at11/112+28527032..28531089IBR domain containing protein, expressed
LOC_Os02g46730OsAffx.24757.1.S1_at11/112+28533360..28537155hypothetical protein
LOC_Os02g46730Os.52424.1.S1_x_at1/112+28533360..28537155hypothetical protein
LOC_Os02g46740Os.54845.1.S1_at11/112+28539305..28542468RWD domain containing protein, expressed
LOC_Os02g46750Os.27694.1.S1_at11/112+28542482..28545958expressed protein
LOC_Os02g46760OsAffx.12527.1.S1_at11/112+28546870..28547892Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009733biological_processresponse to auxin stimulus
GO:0009908biological_processflower development
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10375.1.S1_at--969--4611Chr02:28521212..28521236 (25 bp)
GCGAGGCCTCACTCAAGGAGATACA
LOC_Os02g46710
Os.10375.1.S1_at--468--5111Chr02:28521671..28521693 (23 bp)
GCACTACACTCTTGTTTGCTAGGAG
LOC_Os02g46710
Os.10375.1.S1_at--372--4411NONE
GCCACTCGTTGCAATCTTGATCAGT
NONE
Os.10375.1.S1_at--203--6451Chr02:28523972..28523996 (25 bp)
GATCAGTTAATTGCTCCAGTTTAAA
NONE
Os.10375.1.S1_at--378--2751Chr02:28523995..28524019 (25 bp)
AAGACTTTTTTCACTATAGGCAGGT
NONE
Os.10375.1.S1_at--663--9651Chr02:28524038..28524062 (25 bp)
TCAGTTGAAACTGCGCTGTGTAGAC
NONE
Os.10375.1.S1_at--1073--5691Chr02:28524093..28524117 (25 bp)
GACTTTGACCCTTTGATCATATGGA
NONE
Os.10375.1.S1_at--278--5331Chr02:28524150..28524174 (25 bp)
GAAGTGGCCATTTACATAGTGCAAA
NONE
Os.10375.1.S1_at--1052--731Chr02:28524216..28524240 (25 bp)
ATGTTACTTGTCGTCTATGGTTTTA
NONE
Os.10375.1.S1_at--233--2411Chr02:28524274..28524298 (25 bp)
AAACACTGTTGAGCGATCCAGCTAT
NONE
Os.10375.1.S1_at--770--5852Chr02:28524284..28524308 (25 bp)
GAGCGATCCAGCTATTTAGCACTTG
NONE
Target Sequence 
GCGAGGCCTCACTCAAGGAGATACACCATCAGAATTTTGTGAGGTAGAACGGGATTGTTCATTATGGAAGATTAGCACTA
CACTCTTGTTTGCTAGGAGCTATCTAAGGAAAAAGAATAAATAAGATCTTATCCTCTTCAACATGATGCTATCATCCTTG
GTCATCAGGAAAAACTCAGAAGACCATGGACCACTCCTGCCACTCGTTGCAATCTTGATCAGTTAATTGCTCCAGTTTAA
AGACTTTTTTCACTATAGGCAGGTGAGACTGAAGATTGTTTGTCAGTTGAAACTGCGCTGTGTAGACAGTAGCCCTTGCT
TGAGAAATGATGGCTATGACTTTGACCCTTTGATCATATGGAACAACAACACTTCAGTATGCAAGAAGCTCTTGGAAGTG
GCCATTTACATAGTGCAAAATATCCATNAATTACTATTATCCCTTTTATCCATCAGAATTATGTTACTTGTCGTCTATGG
TTTTAATAACACCAAATTTTGGTGTAAACATGGTATCTAAACACTGTTGAGCGATCCAGCTATTTAGCACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10375.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis