Browse Element(s) Details


Os.31907.1.S1_x_at

Description gb:AK106518.1
DB_XREF= gi:32991727
TID=Os.31907.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.31907 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-107-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-107-C02, full insert sequence.
FL= gb:AK106518.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4668011/11P-glycoprotein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46630OsAffx.22940.2.S1_s_at11/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630OsAffx.22940.1.S1_s_at11/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630OsAffx.22940.3.S1_x_at8/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630Os.35344.3.S1_x_at8/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630Os.35344.18.S1_x_at8/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630OsAffx.22940.5.S1_x_at7/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630OsAffx.22940.5.S1_at6/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630OsAffx.22940.2.S1_at4/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630OsAffx.31552.2.S1_at1/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46640Os.18397.1.S1_at11/112+28458867..28461493Chaperone protein dnaJ, putative, expressed
LOC_Os02g46650Os.10054.1.S1_at5/112+28466956..28472140Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os02g46660Os.7663.1.S1_at11/112+28472750..28475487Gtk16 protein, putative, expressed
LOC_Os02g46670OsAffx.24756.1.S1_at11/112+28477174..28478268hypothetical protein
LOC_Os02g46680Os.31907.1.S1_x_at11/112+28481686..28492751P-glycoprotein, putative, expressed
LOC_Os02g46680OsAffx.25903.3.S1_at1/112+28481686..28492751P-glycoprotein, putative, expressed
LOC_Os02g46690OsAffx.12526.1.S1_at11/112+28506520..28508121F-box domain containing protein
LOC_Os02g46700Os.26865.1.S1_at10/112+28511390..28515488GCN5-related N-acetyltransferase, putative, expressed
LOC_Os02g46710Os.10375.1.S1_at2/112+28517389..28522754hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008361biological_processregulation of cell size
GO:0009637biological_processresponse to blue light
GO:0009639biological_processresponse to red or far red light
GO:0009640biological_processphotomorphogenesis
GO:0009733biological_processresponse to auxin stimulus
GO:0009958biological_processpositive gravitropism
GO:0043481biological_processanthocyanin accumulation in tissues in response to UV light
GO:0005739cellular_componentmitochondrion
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.31907.1.S1_x_at--485--6291Chr02:28482141..28482165 (25 bp)
GATGAGGAACCGGACCACCGTGATG
LOC_Os02g46680
Os.31907.1.S1_x_at--520--5091Chr02:28482111..28482135 (25 bp)
GCACCGGCTGTCGACGATCAAGAAC
LOC_Os02g46680
Os.31907.1.S1_x_at--27--9611Chr02:28482079..28482103 (25 bp)
TCATCTCGGTGCTGCAGGACGGCAA
LOC_Os02g46680
Os.31907.1.S1_x_at--343--8231Chr02:28482059..28482083 (25 bp)
GGCAAGATCATCGAGCAGGGTGCTC
LOC_Os02g46680
Os.31907.1.S1_x_at--588--491Chr02:28482023..28482047 (25 bp)
ATCGAGAACAGGAACGGCGCCTACC
LOC_Os02g46680
Os.31907.1.S1_x_at--883--2691Chr02:28481996..28482020 (25 bp)
AAGCTCGTCAGCTTGCAGCAGCAGC
LOC_Os02g46680
Os.31907.1.S1_x_at--182--4951Chr02:28481946..28481970 (25 bp)
GCATTGATCTTGATCGATCTCCTGT
LOC_Os02g46680
Os.31907.1.S1_x_at--809--6411Chr02:28481931..28481955 (25 bp)
GATCTCCTGTGCTTCTGTATATTTG
LOC_Os02g46680
Os.31907.1.S1_x_at--513--8771Chr02:28481916..28481940 (25 bp)
TGTATATTTGCTGTGTGCCTCCGCT
LOC_Os02g46680
Os.31907.1.S1_x_at--524--3791Chr02:28481898..28481922 (25 bp)
CTCCGCTTCTTCTTGGTTGTTAAGG
LOC_Os02g46680
Os.31907.1.S1_x_at--148--7951Chr02:28481775..28481799 (25 bp)
GGATTTGTTTCTCTTTTTCTGTACA
LOC_Os02g46680
Target Sequence 
GATGAGGAACCGGACCACCGTGATGGTGGCGCACCGGCTGTCGACGATCAAGAACGCCGACGTCATCTCGGTGCTGCAGG
ACGGCAAGATCATCGAGCAGGGTGCTCACCACCAGCTCATCGAGAACAGGAACGGCGCCTACCACAAGCTCGTCAGCTTG
CAGCAGCAGCAACAGCAGCAGGACCAGATGCAGAGGCATTGATCTTGATCGATCTCCTGTGCTTCTGTATATTTGCTGTG
TGCCTCCGCTTCTTCTTGGTTGTTAAGGAGTACAGTACATGGAATGAAACAAATCGCTGCGGTAAGATTCAATTATTTTT
CCATTGTAAAACGAGGGGTTCACGATTATGTACAAGAGAAAGTATTGGATTTGTTTCTCTTTTTCTGTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.31907.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis