Browse Element(s) Details


OsAffx.12526.1.S1_at

Description tigr:9630.m04539
TID=OsAffx.12526.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4669011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46680Os.31907.1.S1_x_at11/112+28481686..28492751P-glycoprotein, putative, expressed
LOC_Os02g46680OsAffx.25903.3.S1_at1/112+28481686..28492751P-glycoprotein, putative, expressed
LOC_Os02g46690OsAffx.12526.1.S1_at11/112+28506520..28508121F-box domain containing protein
LOC_Os02g46700Os.26865.1.S1_at10/112+28511390..28515488GCN5-related N-acetyltransferase, putative, expressed
LOC_Os02g46710Os.10375.1.S1_at2/112+28517389..28522754hypothetical protein
LOC_Os02g46720Os.52424.1.S1_x_at11/112+28527032..28531089IBR domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12526.1.S1_at--855--5351Chr02:28507233..28507257 (25 bp)
GAAGAGGTCGTTCTTGCCATCAAGA
LOC_Os02g46690
OsAffx.12526.1.S1_at--1004--1591Chr02:28507196..28507220 (25 bp)
AGCTCCAGGAGCCTAATCTCAGAGA
LOC_Os02g46690
OsAffx.12526.1.S1_at--478--8751Chr02:28507150..28507174 (25 bp)
TGTACAGAGCCTTATGCTTTCACCT
LOC_Os02g46690
OsAffx.12526.1.S1_at--188--5951Chr02:28507030..28507053 (24 bp)
GAGCAATTTGCACGTCCTGAGGAGT
LOC_Os02g46690
OsAffx.12526.1.S1_at--179--6111Chr02:28507009..28507033 (25 bp)
GAGTGGTCCAAGGTGCGGCTAAACA
LOC_Os02g46690
OsAffx.12526.1.S1_at--538--2751Chr02:28506899..28506921 (23 bp)
AAGAACTCTCTGTGTCTGTTGTGCC
LOC_Os02g46690
OsAffx.12526.1.S1_at--241--8891Chr02:28506710..28506734 (25 bp)
TGAGGCATCTCAGGGCAGTTAGGAT
LOC_Os02g46690
OsAffx.12526.1.S1_at--301--10851Chr02:28506657..28506681 (25 bp)
TTGGATCTTGTTAAGCTTCTGCTCA
LOC_Os02g46690
OsAffx.12526.1.S1_at--1116--8851Chr02:28506611..28506635 (25 bp)
TGATGACTATTGTGCCTTCGATGGA
LOC_Os02g46690
OsAffx.12526.1.S1_at--689--931Chr02:28506575..28506599 (25 bp)
AGGCAAAGTTCAGGCGCAGGGTATT
LOC_Os02g46690
OsAffx.12526.1.S1_at--617--8991Chr02:28506551..28506575 (25 bp)
TGAAGCTCAGAAAGGCCTCCCGAGA
LOC_Os02g46690
Target Sequence 
GAAGAGGTCGTTCTTGCCATCAAGAAGCCGCAGGTCAAGCTCCAGGAGCCTAATCTCAGAGAGCTTCTTTCTTTGGTTGG
GAATGTACAGAGCCTTATGCTTTCACCTTGGTGCATTGAGCAATTTGCACGTCCTGAGGAGTGGTCCAAGGTGCGGCTAA
ACAAAGTGAGGCAGTTGTCATGTATAATAGAGAGGAGAGAAGAAGGTGCTTCATCCATTGCCCCATTGCTCGCAAATTGT
CAGAATGTGGAAGAACTCTCTGTGTCTGTTGTGCCATCGCAATGCAAGCGGAGATGGGGTAGCGATGATGGAGCAAACCA
TTGGGTTATGGGAGGTAAAGGGGTCGTGCTGAGGCATCTCAGGGCAGTTAGGATGGTGTACATCGATGAGAGCAAGAGTG
GATTGGATCTTGTTAAGCTTCTGCTCAAGAACACACCAATGTTAGAGATGATGACTATTGTGCCTTCGATGGATGGCCTT
GAGCAGGCAAAGTTCAGGCGCAGGGTATTGAAGCTCAGAAAGGCCTCCCGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12526.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis