Browse Element(s) Details


OsAffx.24756.1.S1_at

Description tigr:9630.m04537
TID=OsAffx.24756.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4667011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46630OsAffx.22940.2.S1_s_at11/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630OsAffx.22940.1.S1_s_at11/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630OsAffx.22940.3.S1_x_at8/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630Os.35344.3.S1_x_at8/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630Os.35344.18.S1_x_at8/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630OsAffx.22940.5.S1_x_at7/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630OsAffx.22940.5.S1_at6/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630OsAffx.22940.2.S1_at4/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630OsAffx.31552.2.S1_at1/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46640Os.18397.1.S1_at11/112+28458867..28461493Chaperone protein dnaJ, putative, expressed
LOC_Os02g46650Os.10054.1.S1_at5/112+28466956..28472140Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os02g46660Os.7663.1.S1_at11/112+28472750..28475487Gtk16 protein, putative, expressed
LOC_Os02g46670OsAffx.24756.1.S1_at11/112+28477174..28478268hypothetical protein
LOC_Os02g46680Os.31907.1.S1_x_at11/112+28481686..28492751P-glycoprotein, putative, expressed
LOC_Os02g46680OsAffx.25903.3.S1_at1/112+28481686..28492751P-glycoprotein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24756.1.S1_at--110--5751Chr02:28478193..28478217 (25 bp)
GACGGAGCCATAGGCTTGACAACAA
LOC_Os02g46670
OsAffx.24756.1.S1_at--13--8971Chr02:28478177..28478201 (25 bp)
TGACAACAAGCGATGGGCTGGTGAT
LOC_Os02g46670
OsAffx.24756.1.S1_at--222--6311Chr02:28478071..28478095 (25 bp)
GATGACGACGAAGGCACTCTCCGTC
LOC_Os02g46670
OsAffx.24756.1.S1_at--428--471Chr02:28477377..28477401 (25 bp)
ATCTCCAGCCTCATAAACCAAGTGA
LOC_Os02g46670
OsAffx.24756.1.S1_at--825--6531Chr02:28477354..28477378 (25 bp)
GATTTTCGAGCAGTTCCTATCAATT
LOC_Os02g46670
OsAffx.24756.1.S1_at--244--10411Chr02:28477330..28477354 (25 bp)
TTTTGTCTGCAATCTCTGCATCCAT
LOC_Os02g46670
OsAffx.24756.1.S1_at--776--2131Chr02:28477297..28477321 (25 bp)
ACAGCAGCCACAGAAACCGTTACGT
LOC_Os02g46670
OsAffx.24756.1.S1_at--976--2611Chr02:28477283..28477307 (25 bp)
AACCGTTACGTTTGTCTGCTTATGC
LOC_Os02g46670
OsAffx.24756.1.S1_at--643--10811Chr02:28477272..28477296 (25 bp)
TTGTCTGCTTATGCCGTGCAAAGGA
LOC_Os02g46670
OsAffx.24756.1.S1_at--828--2751Chr02:28477227..28477251 (25 bp)
AAGACACAGTACACTTGCTACCTGA
LOC_Os02g46670
OsAffx.24756.1.S1_at--109--5511Chr02:28477204..28477228 (25 bp)
GAAACGAAACAAGCTCCGTCCAAGC
LOC_Os02g46670
Target Sequence 
GACGGAGCCATAGGCTTGACAACAAGCGATGGGCTGGTGATGGCAGTAGGGACAATGCGGGGCACATGGTTAGGAGGTGA
GGGTGAAGGCATTGGGAGGGAGGAGCCGCTGGAGACAGGAAAGATGACGACGAAGGCACTCTCCGTCGCCAGCTTGAGAA
GGAGGAGGCCAGTTCTTTGCTCGGAGATCTCCAGCCTCATAAACCAAGTGATTTTCGAGCAGTTCCTATCAATTTTTGTC
TGCAATCTCTGCATCCATGCTCGCAAACAGCAGCCACAGAAACCGTTACGTTTGTCTGCTTATGCCGTGCAAAGGAAAGA
AACAACAGCCACAACAAAGACACAGTACACTTGCTACCTGAAACGAAACAAGCTCCGTCCAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24756.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis