Browse Element(s) Details


Os.7663.1.S1_at

Description gb:AK103651.1
DB_XREF= gi:32988860
TID=Os.7663.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7663 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033135D20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033135D20, full insert sequence.
FL= gb:AK103651.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4666011/11Gtk16 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46620Os.51385.1.S1_at11/112+28448016..28449039expressed protein
LOC_Os02g46630OsAffx.22940.2.S1_s_at11/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630OsAffx.22940.1.S1_s_at11/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630OsAffx.22940.3.S1_x_at8/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630Os.35344.3.S1_x_at8/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630Os.35344.18.S1_x_at8/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630OsAffx.22940.5.S1_x_at7/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630OsAffx.22940.5.S1_at6/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630OsAffx.22940.2.S1_at4/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630OsAffx.31552.2.S1_at1/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46640Os.18397.1.S1_at11/112+28458867..28461493Chaperone protein dnaJ, putative, expressed
LOC_Os02g46650Os.10054.1.S1_at5/112+28466956..28472140Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os02g46660Os.7663.1.S1_at11/112+28472750..28475487Gtk16 protein, putative, expressed
LOC_Os02g46670OsAffx.24756.1.S1_at11/112+28477174..28478268hypothetical protein
LOC_Os02g46680Os.31907.1.S1_x_at11/112+28481686..28492751P-glycoprotein, putative, expressed
LOC_Os02g46680OsAffx.25903.3.S1_at1/112+28481686..28492751P-glycoprotein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7663.1.S1_at--289--8131Chr02:28473422..28473446 (25 bp)
GGACTAATCCCAGCTGCCTATGTGA
LOC_Os02g46660
Os.7663.1.S1_at--570--3091Chr02:28473247..28473271 (25 bp)
AATAGCACTGTTGTTCTTGATTGGG
LOC_Os02g46660
Os.7663.1.S1_at--348--7371Chr02:28473213..28473237 (25 bp)
GTGACACCGACATTGTTGGGCAAGA
LOC_Os02g46660
Os.7663.1.S1_at--112--1191Chr02:28473147..28473171 (25 bp)
AGTAGCTGATCACTTGCACGCGAAC
LOC_Os02g46660
Os.7663.1.S1_at--4--1751Chr02:28473114..28473138 (25 bp)
ACCTCCCCTTCTGTGTACATATGAA
LOC_Os02g46660
Os.7663.1.S1_at--213--9071Chr02:28473084..28473108 (25 bp)
TGCATTTGGTTGCTTCCATGGCCTT
LOC_Os02g46660
Os.7663.1.S1_at--886--4291Chr02:28473063..28473087 (25 bp)
CCTTTGTTTGGATCGGTGCAACTTA
LOC_Os02g46660
Os.7663.1.S1_at--712--2611Chr02:28472979..28473003 (25 bp)
AACCCTTTGTGCATGGTGCTGCGAA
LOC_Os02g46660
Os.7663.1.S1_at--1142--5631Chr02:28472951..28472975 (25 bp)
GACACCTCACTGTCACAACATTATG
LOC_Os02g46660
Os.7663.1.S1_at--20--8191Chr02:28472794..28472818 (25 bp)
GGAACCTTGTCTTAGTGATCTGTGA
LOC_Os02g46660
Os.7663.1.S1_at--874--7391Chr02:28472780..28472804 (25 bp)
GTGATCTGTGAATCTGTCCATGAAA
LOC_Os02g46660
Target Sequence 
GGACTAATCCCAGCTGCCTATGTGACTGTCAGGGCTGGAATAGCTTTGGGAGACTTGAGCTCATTGAGTGACCTATATGA
TAAACAATCAATAGCACTGTTGTTCTTGATTGGGGTTGTTTCGGTGACACCGACATTGTTGGGCAAGAACGAGAAGCAAC
AAGGCAAAGGGCCAGAAATGGTAGCTAGCAGTAGCTGATCACTTGCACGCGAACTCCTTCTCACCTCCCCTTCTGTGTAC
ATATGAAGATCCTGCATTTGGTTGCTTCCATGGCCTTTGTTTGGATCGGTGCAACTTATGGCCGGCCAAAGGGCAACAGA
ACATGGCAAGGGCCCCTCTTTCTTTCTCCACTTGTGGAACCCTTTGTGCATGGTGCTGCGAAAGGGACACCTCACTGTCA
CAACATTATGATTCTGGGGAACAAGATGGGCCACCAGAGCTAAAATGACCCATTTGTTCTGTTTAACATCTTGTTTAGAT
CGAAGGAACAGCTGATCTTATCATCATTGTATATGCACTGCTAACCAGATTCAGTTTTTCATGGAACCTTGTCTTAGTGA
TCTGTGAATCTGTCCATGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7663.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis