Browse Element(s) Details


Os.51385.1.S1_at

Description gb:AK062683.1
DB_XREF= gi:32972701
TID=Os.51385.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51385 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-105-H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-H07, full insert sequence.
FL= gb:AK062683.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4662011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46610Os.18638.1.S1_at11/112+28429222..28430833zinc-binding family protein, putative, expressed
LOC_Os02g46620Os.51385.1.S1_at11/112+28448016..28449039expressed protein
LOC_Os02g46630OsAffx.22940.2.S1_s_at11/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630OsAffx.22940.1.S1_s_at11/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630OsAffx.22940.3.S1_x_at8/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630Os.35344.3.S1_x_at8/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630Os.35344.18.S1_x_at8/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630OsAffx.22940.5.S1_x_at7/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630OsAffx.22940.5.S1_at6/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630OsAffx.22940.2.S1_at4/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630OsAffx.31552.2.S1_at1/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46640Os.18397.1.S1_at11/112+28458867..28461493Chaperone protein dnaJ, putative, expressed
LOC_Os02g46650Os.10054.1.S1_at5/112+28466956..28472140Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os02g46660Os.7663.1.S1_at11/112+28472750..28475487Gtk16 protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51385.1.S1_at--761--9371Chr02:28448588..28448612 (25 bp)
TCGAGCTCGGTCTCCGCGACGGTAG
LOC_Os02g46620
Os.51385.1.S1_at--693--891Chr02:28448679..28448703 (25 bp)
AGGCGTTCCGGCACCGGAGATCGTC
LOC_Os02g46620
Os.51385.1.S1_at--348--4991Chr02:28448742..28448766 (25 bp)
GCATGGCCGGAAAAAGCGATCAGTA
LOC_Os02g46620
Os.51385.1.S1_at--418--4051Chr02:28448758..28448782 (25 bp)
CGATCAGTAGGGATGTGTGCTGCTT
LOC_Os02g46620
Os.51385.1.S1_at--64--791Chr02:28448770..28448794 (25 bp)
ATGTGTGCTGCTTTAGAGGACTAAA
LOC_Os02g46620
Os.51385.1.S1_at--478--10391Chr02:28448838..28448862 (25 bp)
TTTTGGCCTTTTTGTGGCTTCGCGT
LOC_Os02g46620
Os.51385.1.S1_at--793--8292Chr02:28448853..28448877 (25 bp)
GGCTTCGCGTGCTAATCTTATGATT
LOC_Os02g46620
Os.51385.1.S1_at--152--1712Chr02:28448885..28448909 (25 bp)
ACCAAACTCCAAAGCCTGTGATTTG
LOC_Os02g46620
Os.51385.1.S1_at--352--3292Chr02:28448894..28448918 (25 bp)
CAAAGCCTGTGATTTGGGCGTAATG
LOC_Os02g46620
Os.51385.1.S1_at--782--7572Chr02:28448909..28448933 (25 bp)
GGGCGTAATGTGTGCATATGCTCCT
LOC_Os02g46620
Os.51385.1.S1_at--1104--251Chr02:28448924..28448948 (25 bp)
ATATGCTCCTGCCAGTGGTGTTCTC
LOC_Os02g46620
Target Sequence 
TCGAGCTCGGTCTCCGCGACGGTAGTGGAGGCAAAAGCGGCGGCCGCGGCGGCGAAGGCGCGGTGGGGGTGGCACTTCCC
GAGCCCGCTCAAGGCGTTCCGGCACCGGAGATCGTCGGCGAGCATGCCGGAGCGAGGATGAGTGAGATGGCTCGGCATGG
CCGGAAAAAGCGATCAGTAGGGATGTGTGCTGCTTTAGAGGACTAAATTAATTAATTAACTAGACGGGGGAGATTACAGG
AGATTTTTCCTTTTGGCCTTTTTGTGGCTTCGCGTGCTAATCTTATGATTAAATTAGACCAAACTCCAAAGCCTGTGATT
TGGGCGTAATGTGTGCATATGCTCCTGCCAGTGGTGTTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51385.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis