Browse Element(s) Details


Os.18638.1.S1_at

Description gb:AK066953.1
DB_XREF= gi:32976971
TID=Os.18638.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18638 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-041-A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013092A21, full insert sequence.
FL= gb:AK104818.1 gb:AK066953.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4661011/11zinc-binding family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46589NANA2+28414463..28414706NA
LOC_Os02g46600Os.15868.1.S1_at8/112+28415184..28418058Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g46610Os.18638.1.S1_at11/112+28429222..28430833zinc-binding family protein, putative, expressed
LOC_Os02g46620Os.51385.1.S1_at11/112+28448016..28449039expressed protein
LOC_Os02g46630OsAffx.22940.2.S1_s_at11/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630OsAffx.22940.1.S1_s_at11/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630OsAffx.22940.3.S1_x_at8/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630Os.35344.3.S1_x_at8/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630Os.35344.18.S1_x_at8/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630OsAffx.22940.5.S1_x_at7/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630OsAffx.22940.5.S1_at6/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630OsAffx.22940.2.S1_at4/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630OsAffx.31552.2.S1_at1/112+28450686..28457238SWIM zinc finger family protein

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18638.1.S1_at--165--1691Chr02:28429660..28429684 (25 bp)
AGCCTCATCGTCGAGTTCTAGGGAG
LOC_Os02g46610
Os.18638.1.S1_at--321--1231Chr02:28429647..28429671 (25 bp)
AGTTCTAGGGAGTCTCGACGCGTCC
LOC_Os02g46610
Os.18638.1.S1_at--532--7251Chr02:28429626..28429650 (25 bp)
GTCCGCGCCTGATCAACATAGTGTA
LOC_Os02g46610
Os.18638.1.S1_at--882--2231Chr02:28429578..28429602 (25 bp)
ACAATAACCGTGTGCCCCGGAATGG
LOC_Os02g46610
Os.18638.1.S1_at--501--5931Chr02:28429494..28429518 (25 bp)
GAGCAGTAAGCCACGTCACATACAT
LOC_Os02g46610
Os.18638.1.S1_at--39--8771Chr02:28429460..28429484 (25 bp)
TGTTTGTTACTTTTCAGCTTCGGTT
LOC_Os02g46610
Os.18638.1.S1_at--226--4891Chr02:28429444..28429468 (25 bp)
GCTTCGGTTTTTAGTTACAGTTCAG
LOC_Os02g46610
Os.18638.1.S1_at--821--9751Chr02:28429429..28429453 (25 bp)
TACAGTTCAGTTACTCCTAGTTAGT
LOC_Os02g46610
Os.18638.1.S1_at--70--6791Chr02:28429410..28429434 (25 bp)
GTTAGTACCCAGTCAAGTCCAAGCA
LOC_Os02g46610
Os.18638.1.S1_at--375--1971Chr02:28429386..28429410 (25 bp)
ACTGCTGGGTGCTTACGACTCGGTA
LOC_Os02g46610
Os.18638.1.S1_at--263--5031Chr02:28429323..28429347 (25 bp)
GCAGTAGTAGTAACCTCCATATTGT
LOC_Os02g46610
Target Sequence 
AGCCTCATCGTCGAGTTCTAGGGAGTCTCGACGCGTCCGCGCCTGATCAACATAGTGTACTGTACACATGACATAGCCAA
ACACAATAACCGTGTGCCCCGGAATGGCGGCGAGCCCGGCGCTTCCCTTCCCGGAGGCCGGCCGGCGTAATGCCGGAGAA
GGGCAAGAGCAGTAAGCCACGTCACATACATATTATAGCTTGTTTGTTACTTTTCAGCTTCGGTTTTTAGTTACAGTTCA
GTTACTCCTAGTTAGTACCCAGTCAAGTCCAAGCACTGCTGGGTGCTTACGACTCGGTAACGGCAACTAAGTTTTGCAAC
CGTGTAAAAATATAGTAGCAGTAGTAGTAACCTCCATATTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18638.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis