Browse Element(s) Details


Os.18397.1.S1_at

Description gb:AK071581.1
DB_XREF= gi:32981604
TID=Os.18397.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18397 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-025-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023100A17, full insert sequence.
FL= gb:AK119260.1 gb:AK071581.1 gb:AK105032.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4664011/11Chaperone protein dnaJ, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46620Os.51385.1.S1_at11/112+28448016..28449039expressed protein
LOC_Os02g46630OsAffx.22940.2.S1_s_at11/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630OsAffx.22940.1.S1_s_at11/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630OsAffx.22940.3.S1_x_at8/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630Os.35344.3.S1_x_at8/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630Os.35344.18.S1_x_at8/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630OsAffx.22940.5.S1_x_at7/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630OsAffx.22940.5.S1_at6/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630OsAffx.22940.2.S1_at4/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46630OsAffx.31552.2.S1_at1/112+28450686..28457238SWIM zinc finger family protein
LOC_Os02g46640Os.18397.1.S1_at11/112+28458867..28461493Chaperone protein dnaJ, putative, expressed
LOC_Os02g46650Os.10054.1.S1_at5/112+28466956..28472140Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os02g46660Os.7663.1.S1_at11/112+28472750..28475487Gtk16 protein, putative, expressed
LOC_Os02g46670OsAffx.24756.1.S1_at11/112+28477174..28478268hypothetical protein
LOC_Os02g46680Os.31907.1.S1_x_at11/112+28481686..28492751P-glycoprotein, putative, expressed
LOC_Os02g46680OsAffx.25903.3.S1_at1/112+28481686..28492751P-glycoprotein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18397.1.S1_at--112--3151Chr02:28461217..28461241 (25 bp)
AATTGTTACGCTGCATGGACGGAGC
LOC_Os02g46640
Os.18397.1.S1_at--695--7911Chr02:28459800..28459824 (25 bp)
GGTTGATTACGATGCATCCGATGAC
LOC_Os02g46640
Os.18397.1.S1_at--688--10571Chr02:28459433..28459457 (25 bp)
TTCTAAGTGATCCAGCTAAGCGCCT
LOC_Os02g46640
Os.18397.1.S1_at--666--4811Chr02:28459419..28459443 (25 bp)
GCTAAGCGCCTTGAATACGACCTTT
LOC_Os02g46640
Os.18397.1.S1_at--941--5811Chr02:28459401..28459425 (25 bp)
GACCTTTCCGGATGTTATGAGTTAA
LOC_Os02g46640
Os.18397.1.S1_at--331--6211Chr02:28459246..28459270 (25 bp)
GATACTTACCTGCAATGGTCTTGGC
LOC_Os02g46640
Os.18397.1.S1_at--403--8071Chr02:28459051..28459075 (25 bp)
GGAGCCCCATTGATCTATAGGTACA
LOC_Os02g46640
Os.18397.1.S1_at--11--7851Chr02:28459032..28459056 (25 bp)
GGTACATCTTATTTGTCCATGAGCT
LOC_Os02g46640
Os.18397.1.S1_at--687--5911Chr02:28459012..28459036 (25 bp)
GAGCTTCTTCAGTACTTTCTTTGAG
LOC_Os02g46640
Os.18397.1.S1_at--125--6231Chr02:28458990..28459014 (25 bp)
GAGGCCAATTGGATGCTTAGCTGTT
LOC_Os02g46640
Os.18397.1.S1_at--566--10111Chr02:28458951..28458975 (25 bp)
TATGGATACGGCAGGGCATCTCTCT
LOC_Os02g46640
Target Sequence 
AATTGTTACGCTGCATGGACGGAGCAAGCGAGAAGCCTCCCCACAAGGACTATTACAAAGTTCTGGAGGTTGATTACGAT
GCATCCGATGACACCATCAAATTGAGTTATAGAAGATTAGCTTTGATGTGGCATCCAGACAAGCATAAGGGGGATAATGA
TGTCACAGCTAAATTTCAGGAGATCAATGAAGCCTACACAGTTCTAAGTGATCCAGCTAAGCGCCTTGAATACGACCTTT
CCGGATGTTATGAGTTAAATCGATATACTTTGCGTGAGTACCTTACAAGGTTTAAGGGTATGATACTTACCTGCAATGGT
CTTGGCATAGACCANTTCTTCAAAATGGGCCCGGCATTTGAGGGAATTGGAGCCCCATTGATCTATAGGTACATCTTATT
TGTCCATGAGCTTCTTCAGTACTTTCTTTGAGGCCAATTGGATGCTTAGCTGTTTCTTTTAACACAACTATGGATACGGC
AGGGCATCTCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18397.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis