Browse Element(s) Details


Os.27694.1.S1_at

Description gb:AK068426.1
DB_XREF= gi:32978444
TID=Os.27694.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27694 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013157D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013157D01, full insert sequence.
FL= gb:AK068426.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4675011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46710Os.10375.1.S1_at2/112+28517389..28522754hypothetical protein
LOC_Os02g46720Os.52424.1.S1_x_at11/112+28527032..28531089IBR domain containing protein, expressed
LOC_Os02g46730OsAffx.24757.1.S1_at11/112+28533360..28537155hypothetical protein
LOC_Os02g46730Os.52424.1.S1_x_at1/112+28533360..28537155hypothetical protein
LOC_Os02g46740Os.54845.1.S1_at11/112+28539305..28542468RWD domain containing protein, expressed
LOC_Os02g46750Os.27694.1.S1_at11/112+28542482..28545958expressed protein
LOC_Os02g46760OsAffx.12527.1.S1_at11/112+28546870..28547892Protein kinase domain containing protein
LOC_Os02g46770OsAffx.12528.1.S1_x_at11/112+28549925..28550365Leucine Rich Repeat family protein
LOC_Os02g46770OsAffx.12528.1.S1_at11/112+28549925..28550365Leucine Rich Repeat family protein
LOC_Os02g46780Os.47854.1.S1_at11/112+28552395..28554151Myb-related protein Zm1, putative, expressed
LOC_Os02g46790OsAffx.12529.1.S1_at11/112+28561161..28561511hypothetical protein
LOC_Os02g46800NANA2+28567038..28567301hypothetical protein
LOC_Os02g46810NANA2+28568142..28568723amino acid transporter, putative, expressed
LOC_Os02g46820OsAffx.2981.1.S1_at11/112+28570301..28570888hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27694.1.S1_at--816--751Chr02:28543536..28543560 (25 bp)
ATGTCATTTATTCCCTTTTGCGAAG
LOC_Os02g46750
Os.27694.1.S1_at--936--8531Chr02:28543383..28543407 (25 bp)
TGGAGAATACGTTCCGTCTCGACAT
LOC_Os02g46750
Os.27694.1.S1_at--345--4231Chr02:28543370..28543394 (25 bp)
CCGTCTCGACATTTATGCTGCAAGA
LOC_Os02g46750
Os.27694.1.S1_at--36--2051Chr02:28543173..28543197 (25 bp)
ACTTTCTGGCAGATGACCGGTTGTC
LOC_Os02g46750
Os.27694.1.S1_at--808--1771Chr02:28543158..28543182 (25 bp)
ACCGGTTGTCCGAAGCTGTAGATTT
LOC_Os02g46750
Os.27694.1.S1_at--292--5011Chr02:28542879..28542901 (23 bp)
GCAGGCAATGCTAAATCCGGACTAT
LOC_Os02g46750
Os.27694.1.S1_at--906--7051Chr02:28542853..28542877 (25 bp)
GTAAGCGTCCAATTGCTGAAGCTGT
LOC_Os02g46750
Os.27694.1.S1_at--607--4751Chr02:28542839..28542863 (25 bp)
GCTGAAGCTGTACTGAACCATAGGT
LOC_Os02g46750
Os.27694.1.S1_at--836--6331Chr02:28542646..28542670 (25 bp)
GATGCTTCTGTGTGCTTAAACTACC
LOC_Os02g46750
Os.27694.1.S1_at--147--10791Chr02:28542548..28542572 (25 bp)
TTGATTATGTTCTCTGACTCCCTTT
LOC_Os02g46750
Os.27694.1.S1_at--749--6811Chr02:28542496..28542520 (25 bp)
GTTTATACTCTGTAACGGCAGCTTT
LOC_Os02g46750
Target Sequence 
ATGTCATTTATTCCCTTTTGCGAAGCAGGAACTATGGATGGCATTTCATTGCAGAGACTTTTGGAGAATACGTTCCGTCT
CGACATTTATGCTGCAAGAGAGTACTTTCTGGCAGATGACCGGTTGTCCGAAGCTGTAGATTTTCTAGACTTGGGTGATG
GTGCCGGCTGGGAGTTGTTGCAGGCAATGCTAAATCCGGACTATCGTAAGCGTCCAATTGCTGAAGCTGTACTGAACCAT
AGGTTTTTGACTGGGGCTGTCTTATGGAACTAATCAGCAACAAGATTCCACAAGGTCCCGGCGAAAAAAAAAAACAAGAT
TCCACAAGCAAATTCATGATGTACCGTACATTCAAATGTTTGCATTGTATGGAAAAAATTTGTACGAAATGTCCAAGCAT
TTCATGAAATCAGATGCTTCTGTGTGCTTAAACTACCGGGAGCGATGTATATAGTCAATGAATCGTGTGTGAGAATANCA
ANANGATCGATTTCTTTTGCGGNGTTATTCTTGATTATGTTCTCTGACTCCCTTTTTATTTTCAGATTTGTTTATATGAA
CAGTTTATACTCTGTAACGGCAGCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27694.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis