Browse Element(s) Details


OsAffx.22848.3.S1_x_at

Description gb:NM_196625.1
DB_XREF= gi:37534609
TID=OsAffx.22848.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative gag-pol protein (OSJNBa0073D04.35), mRNA.
PROD=putative gag-pol protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2949011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g5269010/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g315407/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g081504/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g278704/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g441504/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g505104/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g361003/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g297003/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g387103/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g045103/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g433903/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g405703/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g468803/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g562603/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g684103/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g354303/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g360503/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g080403/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g417403/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g366203/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g036003/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g187603/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g373003/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g363902/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g310702/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g033592/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g407202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g462402/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g591402/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g359302/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g290202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g034492/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g035602/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g077502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g471002/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g592502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g589201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g438001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g635501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g185201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g112201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g454401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g536501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g404701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g353901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g454301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g476101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g014301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g047201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g303201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g350401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g733201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g380301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g506701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g274901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g239801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g034601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g302001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g067701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g550201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g630901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g397901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g287241/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g173701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g344901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g263401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g015341/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g069201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g453701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g225701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g036301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g175101/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29430OsAffx.30588.1.S1_at11/1110+14960950..14963552hypothetical protein
LOC_Os10g29440OsAffx.18445.1.S1_at11/1110+14964658..14965809BTB/POZ domain containing protein, expressed
LOC_Os10g29450OsAffx.30795.1.S1_at11/1110+14971269..14971820hypothetical protein
LOC_Os10g29450OsAffx.30795.1.S1_x_at10/1110+14971269..14971820hypothetical protein
LOC_Os10g29450OsAffx.30795.3.S1_at4/1110+14971269..14971820hypothetical protein
LOC_Os10g29460OsAffx.30589.1.S1_at11/1110+14973201..14973872MATH domain containing protein
LOC_Os10g29470Os.7496.1.S1_a_at11/1110+14974506..14979907mannitol dehydrogenase, putative, expressed
LOC_Os10g29470OsAffx.20940.1.S1_at1/1110+14974506..14979907mannitol dehydrogenase, putative, expressed
LOC_Os10g29490OsAffx.22848.3.S1_x_at11/1110+14983679..14990610retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g29490OsAffx.22848.4.S1_at2/1110+14983679..14990610retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g29490OsAffx.22848.4.S1_x_at1/1110+14983679..14990610retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g29502Os.46514.1.S1_at10/1110+14997293..15000942expressed protein
LOC_Os10g29502Os.46514.2.S1_x_at6/1110+14997293..15000942expressed protein
LOC_Os10g29502Os.46514.2.S1_at1/1110+14997293..15000942expressed protein
LOC_Os10g29514Os.12052.1.S1_at11/1110+15001215..15006732expressed protein
LOC_Os10g29514Os.46514.2.S1_x_at5/1110+15001215..15006732expressed protein
LOC_Os10g29514OsAffx.21636.1.S1_x_at2/1110+15001215..15006732expressed protein
LOC_Os10g29530Os.26783.1.S1_at11/1110+15008816..15011868expressed protein
LOC_Os10g29530Os.26783.2.S1_x_at10/1110+15008816..15011868expressed protein
LOC_Os10g29530Os.57299.1.S1_at9/1110+15008816..15011868expressed protein
LOC_Os10g29540Os.46677.1.S1_at11/1110+15012493..15021359EDR1, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22848.3.S1_x_at--21--30137Chr12:22863587..22863610 (24 bp)
AATCCGAGAACGTTTAAAGACAGCG
LOC_Os12g37300
OsAffx.22848.3.S1_x_at--240--13730Chr12:22863603..22863626 (24 bp)
AGACAGCGCAGAACCGTCAGAAAAG
LOC_Os12g37300
OsAffx.22848.3.S1_x_at--247--56318Chr08:22974590..22974610 (21 bp)
GACAGCGCAGAACCGTCAGAAAAGT
LOC_Os08g36620
OsAffx.22848.3.S1_x_at--354--4996Chr08:19375698..19376161 (25 bp)
GCAGAACCGTCAGAAAAGTTACGCT
LOC_Os08g31540
OsAffx.22848.3.S1_x_at--457--1413Chr08:19376148..19376172 (25 bp)
AGAAAAGTTACGCTGACAATCGAAG
LOC_Os08g31540
OsAffx.22848.3.S1_x_at--952--5513Chr08:19376149..19376173 (25 bp)
GAAAAGTTACGCTGACAATCGAAGG
LOC_Os08g31540
OsAffx.22848.3.S1_x_at--294--2418Chr11:26148909..26148928 (20 bp)
AAAAGTTACGCTGACAATCGAAGGC
LOC_Os11g44150
OsAffx.22848.3.S1_x_at--704--2315Chr11:26148909..26148929 (21 bp)
AAAGTTACGCTGACAATCGAAGGCG
LOC_Os11g44150
OsAffx.22848.3.S1_x_at--187--2835Chr11:26148909..26148930 (22 bp)
AAGTTACGCTGACAATCGAAGGCGT
LOC_Os11g44150
OsAffx.22848.3.S1_x_at--759--76742Chr12:18651254..18651278 (25 bp)
GGGTATCACCCCTCCGTGGTATGAG
LOC_Os12g31070
OsAffx.22848.3.S1_x_at--205--3711Chr10:14983888..14983912 (25 bp)
CTAAAGAAGTGTCTTCGAGTTCCGG
LOC_Os10g29490
Target Sequence 
AATCCGAGAACGTTTAAAGACAGCGCAGAACCGTCAGAAAAGTTACGCTGACAATCGAAGGCGTGACCTTGAGTTCGAAA
AAGGAGATCATGTGTACCTGCGGGTATCACCCCTCCGTGGTATGAGGAGGTTTGGGATGTCCGGCAAGTTAGCACCCCGC
TACATCGGCCCCTACCTCATAACCGCCAGACGTGGCGAAGTGGCTTATCAGCTTGAGCTACCTGAAGATCTCGCAGATGT
GCACAACGTGTTCCACGTATCCCAGCTAAAGAAGTGTCTTCGAGTTCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22848.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis